diff ProteinResolver.xml @ 15:cf407c3cd493 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

--- a/ProteinResolver.xml	Wed Sep 23 14:37:14 2020 +0000
+++ b/ProteinResolver.xml	Tue Oct 13 18:49:42 2020 +0000
@@ -126,16 +126,16 @@
       </param>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false">
-      <option value="protein_groups_FLAG">protein_groups (Separator, which should be used to split a row into columns)</option>
-      <option value="peptide_table_FLAG">peptide_table (Separator, which should be used to split a row into columns)</option>
-      <option value="protein_table_FLAG">protein_table (Separator, which should be used to split a row into columns)</option>
-      <option value="additional_info_FLAG">additional_info (Separator, which should be used to split a row into columns)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="protein_groups_FLAG">protein_groups (output file. Contains all protein groups)</option>
+      <option value="peptide_table_FLAG">peptide_table (output file)</option>
+      <option value="protein_table_FLAG">protein_table (output file. Contains one protein per line)</option>
+      <option value="additional_info_FLAG">additional_info (output file for additional info)</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -166,6 +166,6 @@
   <help><![CDATA[protein inference
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_ProteinResolver.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_ProteinResolver.html]]></help>
   <expand macro="references"/>
 </tool>