diff PhosphoScoring.xml @ 12:2ed8e11abd16 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/PhosphoScoring.xml	Mon Feb 12 08:34:20 2018 -0500
+++ b/PhosphoScoring.xml	Wed May 15 05:01:11 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="PhosphoScoring" name="PhosphoScoring" version="2.2.0">
+<tool id="PhosphoScoring" name="PhosphoScoring" version="2.3.0">
   <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description>
   <macros>
     <token name="@EXECUTABLE@">PhosphoScoring</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PhosphoScoring
+  <command detect_errors="aggressive"><![CDATA[PhosphoScoring
 
 #if $param_in:
   -in $param_in
@@ -43,7 +43,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file with MS/MS spectra" help="(-in) "/>
     <param name="param_id" type="data" format="idxml" optional="False" label="Identification input file which contains a search against a concatenated sequence database" help="(-id) "/>
@@ -64,5 +64,5 @@
   <help>Scores potential phosphorylation sites in order to localize the most probable sites.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PhosphoScoring.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PhosphoScoring.html</help>
 </tool>