Mercurial > repos > galaxyp > openms_openswathrewritetofeaturexml
diff OpenSwathRewriteToFeatureXML.xml @ 12:2c6c9e743075 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:45:56 -0400 |
| parents | bd4c56af9590 |
| children | fecccb4b673b |
line wrap: on
line diff
--- a/OpenSwathRewriteToFeatureXML.xml Mon Feb 12 08:46:42 2018 -0500 +++ b/OpenSwathRewriteToFeatureXML.xml Wed May 15 05:45:56 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Targeted Experiments]--> -<tool id="OpenSwathRewriteToFeatureXML" name="OpenSwathRewriteToFeatureXML" version="2.2.0"> +<tool id="OpenSwathRewriteToFeatureXML" name="OpenSwathRewriteToFeatureXML" version="2.3.0"> <description>Combines featureXML and mProphet tsv to FDR filtered featureXML.</description> <macros> <token name="@EXECUTABLE@">OpenSwathRewriteToFeatureXML</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>OpenSwathRewriteToFeatureXML + <command detect_errors="aggressive"><![CDATA[OpenSwathRewriteToFeatureXML #if $param_csv: -csv $param_csv @@ -29,7 +29,7 @@ -force #end if #end if -</command> +]]></command> <inputs> <param name="param_csv" type="data" format="tabular" optional="True" label="mProphet tsv output file: "all_peakgroups.xls"" help="(-csv) "/> <param name="param_featureXML" type="data" format="featurexml" optional="False" label="input featureXML file" help="(-featureXML) "/> @@ -44,5 +44,5 @@ <help>Combines featureXML and mProphet tsv to FDR filtered featureXML. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathRewriteToFeatureXML.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathRewriteToFeatureXML.html</help> </tool>