diff OpenSwathDecoyGenerator.xml @ 12:ed62e3f4fd73 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/OpenSwathDecoyGenerator.xml	Mon Feb 12 08:55:56 2018 -0500
+++ b/OpenSwathDecoyGenerator.xml	Wed May 15 06:45:32 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Targeted Experiments]-->
-<tool id="OpenSwathDecoyGenerator" name="OpenSwathDecoyGenerator" version="2.2.0">
+<tool id="OpenSwathDecoyGenerator" name="OpenSwathDecoyGenerator" version="2.3.0">
   <description>Generates decoys according to different models for a specific TraML</description>
   <macros>
     <token name="@EXECUTABLE@">OpenSwathDecoyGenerator</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathDecoyGenerator
+  <command detect_errors="aggressive"><![CDATA[OpenSwathDecoyGenerator
 
 #if $param_in:
   -in $param_in
@@ -71,7 +71,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/>
     <param name="param_method" type="text" size="30" value="shuffle" label="decoy generation method ('shuffle','pseudo-reverse','reverse','shift')" help="(-method) ">
@@ -128,5 +128,5 @@
   <help>Generates decoys according to different models for a specific TraML
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathDecoyGenerator.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathDecoyGenerator.html</help>
 </tool>