Mercurial > repos > galaxyp > openms_mrmmapper
comparison readme.md @ 13:e6a97fe4a41f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:06:35 -0400 |
| parents | d7bae0606b34 |
| children | 63f4e28bcf1a |
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| 12:d7bae0606b34 | 13:e6a97fe4a41f |
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| 168 <output name="param_out" file="DecoyDatabase_output.fasta"/> | 168 <output name="param_out" file="DecoyDatabase_output.fasta"/> |
| 169 </test> | 169 </test> |
| 170 </tests> | 170 </tests> |
| 171 ``` | 171 ``` |
| 172 | 172 |
| 173 | |
| 174 * `This section might not be up to date. It might be worth trying if these tools will run now.` These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in | |
| 175 by the automatic conversion step and are therefore in `tools_blacklist.txt`: | |
| 176 * SeedListGenerator | |
| 177 * SpecLibSearcher | |
| 178 * MapAlignerIdentification | |
| 179 * MapAlignerPoseClustering | |
| 180 * MapAlignerSpectrum | |
| 181 * MapAlignerRTTransformer | |
| 182 | |
| 183 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well: | 173 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well: |
| 184 * OMSSAAdapter | 174 * OMSSAAdapter |
| 185 * MyrimatchAdapter | 175 * MyrimatchAdapter |
| 186 | 176 |
| 187 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: | 177 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: |