# HG changeset patch # User galaxyp # Date 1493312365 14400 # Node ID cd7e5dbbc9885fae80c64c93b599457b09c3b31b # Parent 2e48052e1b95939fcfe35a3ab546e5ec6d59fb83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 50c26f7fbe8a2bd1347c860d7a62480865efc254 diff -r 2e48052e1b95 -r cd7e5dbbc988 readme.md --- a/readme.md Tue Apr 18 15:42:24 2017 -0400 +++ b/readme.md Thu Apr 27 12:59:25 2017 -0400 @@ -102,10 +102,32 @@ [...] ]]> ``` + + * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): + + ``` + + ``` + + * In `IDFileConverter.xml` and `FileConverter.xml` add `auto_format="true"` to the output, e.g.: - + - `` + - `` * To add an example test case to `DecoyDatabase.xml` add the following after the output section. If standard settings change you might have to adjust the options and/or the test files.