Mercurial > repos > galaxyp > openms_mapstatistics

annotate MapStatistics.xml @ 4:f19a65bdb69b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5a45f473c5355720af88e32369b560867899e791
author galaxyp
date Mon, 07 Aug 2017 14:12:42 -0400
parents 0e36627cbfe0
children a46a12fedf7f
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [File Handling]-->
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4 <tool id="MapStatistics" name="MapStatistics" version="2.2.0">
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5 <description>Extract extended statistics on the features of a map for quality control.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">MapStatistics</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>MapStatistics
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_n:
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22 -n $param_n
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23 #end if
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24 #if $param_m:
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25 -m
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26 #end if
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27 #if $param_p:
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28 -p
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29 #end if
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30 #if $param_s:
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31 -s
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32 #end if
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33 #if $adv_opts.adv_opts_selector=='advanced':
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34 #if $adv_opts.param_force:
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35 -force
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36 #end if
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37 #end if
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38 </command>
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39 <inputs>
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40 <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/>
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41 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map" help="(-n) "/>
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42 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
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43 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
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44 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s) "/>
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45 <expand macro="advanced_options">
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46 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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47 </expand>
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48 </inputs>
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49 <outputs>
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50 <data name="param_out" format="txt"/>
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51 </outputs>
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52 <help>Extract extended statistics on the features of a map for quality control.
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53
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54
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55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html</help>
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56 </tool>