Mercurial > repos > galaxyp > openms_maprttransformer

comparison MapRTTransformer.xml @ 3:1b460a43ae29 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author galaxyp
date Fri, 14 Jul 2017 18:57:12 -0400
parents bcb3f7dc36e1
children 490742393ef7
comparison
equal deleted inserted replaced
2:adb1e78506ff 3:1b460a43ae29
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Map Alignment]--> 3 <!--Proposed Tool Section: [Map Alignment]-->
4 <tool id="MapRTTransformer" name="MapRTTransformer" version="2.1.0"> 4 <tool id="MapRTTransformer" name="MapRTTransformer" version="2.2.0">
5 <description>Applies retention time transformations to maps.</description> 5 <description>Applies retention time transformations to maps.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">MapRTTransformer</token> 7 <token name="@EXECUTABLE@">MapRTTransformer</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
104 -force 104 -force
105 #end if 105 #end if
106 #end if 106 #end if
107 </command> 107 </command>
108 <inputs> 108 <inputs>
109 <param name="param_in" type="data" format="featurexml,consensusxml,mzml,idxml" optional="True" label="Input file to transform (separated by blanks)" help="(-in) "/> 109 <param name="param_in" type="data" format="mzml,featurexml,consensusxml,idxml" optional="True" label="Input file to transform (separated by blanks)" help="(-in) "/>
110 <param name="param_trafo_in" type="data" format="trafoxml" optional="False" label="Transformation to apply" help="(-trafo_in) "/> 110 <param name="param_trafo_in" type="data" format="trafoxml" optional="False" label="Transformation to apply" help="(-trafo_in) "/>
111 <param name="param_invert" display="radio" type="boolean" truevalue="-invert" falsevalue="" checked="false" optional="True" label="Invert transformation (approximatively) before applying it" help="(-invert) "/> 111 <param name="param_invert" display="radio" type="boolean" truevalue="-invert" falsevalue="" checked="false" optional="True" label="Invert transformation (approximatively) before applying it" help="(-invert) "/>
112 <param name="param_store_original_rt" display="radio" type="boolean" truevalue="-store_original_rt" falsevalue="" checked="false" optional="True" label="Store the original retention times (before transformation) as meta data in the output file" help="(-store_original_rt) "/> 112 <param name="param_store_original_rt" display="radio" type="boolean" truevalue="-store_original_rt" falsevalue="" checked="false" optional="True" label="Store the original retention times (before transformation) as meta data in the output file" help="(-store_original_rt) "/>
113 <param name="param_model_type" type="select" optional="False" value="none" label="Type of model" help="(-type) "> 113 <param name="param_model_type" type="select" optional="False" value="none" label="Type of model" help="(-type) ">
114 <option value="none" selected="true">none</option> 114 <option value="none" selected="true">none</option>