diff MapAlignerSpectrum.xml @ 3:1b916f993cd8 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

--- a/MapAlignerSpectrum.xml	Wed Sep 23 13:15:43 2020 +0000
+++ b/MapAlignerSpectrum.xml	Tue Oct 13 18:50:53 2020 +0000
@@ -150,14 +150,14 @@
       </section>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false">
-      <option value="out_FLAG">out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option>
-      <option value="trafo_out_FLAG">trafo_out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_FLAG">out (Output files (same file type as 'in'))</option>
+      <option value="trafo_out_FLAG">trafo_out (Transformation output files)</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -184,6 +184,6 @@
   <help><![CDATA[Corrects retention time distortions between maps by spectrum alignment.
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_MapAlignerSpectrum.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MapAlignerSpectrum.html]]></help>
   <expand macro="references"/>
 </tool>