diff LowMemPeakPickerHiRes.xml @ 12:a44b76ac957b draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/LowMemPeakPickerHiRes.xml	Mon Feb 12 09:02:58 2018 -0500
+++ b/LowMemPeakPickerHiRes.xml	Wed May 15 06:59:41 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="LowMemPeakPickerHiRes" name="LowMemPeakPickerHiRes" version="2.2.0">
+<tool id="LowMemPeakPickerHiRes" name="LowMemPeakPickerHiRes" version="2.3.0">
   <description>Finds mass spectrometric peaks in profile mass spectra.</description>
   <macros>
     <token name="@EXECUTABLE@">LowMemPeakPickerHiRes</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>LowMemPeakPickerHiRes
+  <command detect_errors="aggressive"><![CDATA[LowMemPeakPickerHiRes
 
 #if $param_in:
   -in $param_in
@@ -89,7 +89,7 @@
   -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/>
     <param name="param_algorithm_signal_to_noise" type="float" min="0.0" optional="True" value="0.0" label="Minimal signal-to-noise ratio for a peak to be picked (0.0 disables SNT estimation!)" help="(-signal_to_noise) "/>
@@ -133,5 +133,5 @@
   <help>Finds mass spectrometric peaks in profile mass spectra.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LowMemPeakPickerHiRes.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_LowMemPeakPickerHiRes.html</help>
 </tool>