# HG changeset patch # User galaxyp # Date 1503081691 14400 # Node ID e9aa9702e805ff9750ecedb2715d5cf7c1d99b04 # Parent f0281f3ab8ddb06614449aeddce391d5444ffab2 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8d70dbb6c61659d5ced433b168a2a4e32c9af677 diff -r f0281f3ab8dd -r e9aa9702e805 readme.md --- a/readme.md Fri Aug 18 13:52:35 2017 -0400 +++ b/readme.md Fri Aug 18 14:41:31 2017 -0400 @@ -69,6 +69,7 @@ omssa_executable pepnovo_executable \ xtandem_executable param_model_directory \ java_executable java_memory java_permgen \ + r_executable rt_concat_trafo_out \ -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \ -s PATH/TO/SKIP_TOOLS_FILES.txt ``` @@ -117,6 +118,14 @@ ]]> ``` + * In `MetaProSIP.xml` add `R` as a requirement: + + ``` + + r-base + + ``` + * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): ```