Mercurial > repos > galaxyp > openms_idrtcalibration
comparison IDRTCalibration.xml @ 12:55df64372f4a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 05:51:31 -0400 |
parents | 2f4b4714ee41 |
children | a029e413182d |
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11:167e45998f0e | 12:55df64372f4a |
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1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
3 <!--Proposed Tool Section: [ID Processing]--> | 3 <!--Proposed Tool Section: [ID Processing]--> |
4 <tool id="IDRTCalibration" name="IDRTCalibration" version="2.2.0"> | 4 <tool id="IDRTCalibration" name="IDRTCalibration" version="2.3.0"> |
5 <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description> | 5 <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description> |
6 <macros> | 6 <macros> |
7 <token name="@EXECUTABLE@">IDRTCalibration</token> | 7 <token name="@EXECUTABLE@">IDRTCalibration</token> |
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>IDRTCalibration | 13 <command detect_errors="aggressive"><![CDATA[IDRTCalibration |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
33 #if $adv_opts.adv_opts_selector=='advanced': | 33 #if $adv_opts.adv_opts_selector=='advanced': |
34 #if $adv_opts.param_force: | 34 #if $adv_opts.param_force: |
35 -force | 35 -force |
36 #end if | 36 #end if |
37 #end if | 37 #end if |
38 </command> | 38 ]]></command> |
39 <inputs> | 39 <inputs> |
40 <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/> | 40 <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/> |
41 <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file" help="(-calibrant_1_reference) "/> | 41 <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file" help="(-calibrant_1_reference) "/> |
42 <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file" help="(-calibrant_2_reference) "/> | 42 <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file" help="(-calibrant_2_reference) "/> |
43 <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file" help="(-calibrant_1_input) Please note that this value needs to be set. The default value -1.0 is not allowed"/> | 43 <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file" help="(-calibrant_1_input) Please note that this value needs to be set. The default value -1.0 is not allowed"/> |
50 <data name="param_out" format="idxml"/> | 50 <data name="param_out" format="idxml"/> |
51 </outputs> | 51 </outputs> |
52 <help>Can be used to calibrate RTs of peptide hits linearly to standards. | 52 <help>Can be used to calibrate RTs of peptide hits linearly to standards. |
53 | 53 |
54 | 54 |
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRTCalibration.html</help> | 55 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDRTCalibration.html</help> |
56 </tool> | 56 </tool> |