diff IDPosteriorErrorProbability.xml @ 12:e0bff01d89c0 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/IDPosteriorErrorProbability.xml	Mon Feb 12 09:02:36 2018 -0500
+++ b/IDPosteriorErrorProbability.xml	Wed May 15 06:58:55 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="IDPosteriorErrorProbability" name="IDPosteriorErrorProbability" version="2.2.0">
+<tool id="IDPosteriorErrorProbability" name="IDPosteriorErrorProbability" version="2.3.0">
   <description>Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.</description>
   <macros>
     <token name="@EXECUTABLE@">IDPosteriorErrorProbability</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>IDPosteriorErrorProbability
+  <command detect_errors="aggressive"><![CDATA[IDPosteriorErrorProbability
 
 #if $param_in:
   -in $param_in
@@ -55,7 +55,7 @@
   -fit_algorithm:max_nr_iterations $adv_opts.param_fit_algorithm_max_nr_iterations
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/>
     <param name="param_split_charge" display="radio" type="boolean" truevalue="-split_charge" falsevalue="" checked="false" optional="True" label="The search engine scores are split by charge if this flag is set" help="(-split_charge) Thus, for each charge state a new model will be computed"/>
@@ -80,5 +80,5 @@
   <help>Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDPosteriorErrorProbability.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDPosteriorErrorProbability.html</help>
 </tool>