diff IDMapper.xml @ 12:29d6b012e395 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/IDMapper.xml	Mon Feb 12 08:43:40 2018 -0500
+++ b/IDMapper.xml	Wed May 15 05:33:34 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="IDMapper" name="IDMapper" version="2.2.0">
+<tool id="IDMapper" name="IDMapper" version="2.3.0">
   <description>Assigns protein/peptide identifications to features or consensus features.</description>
   <macros>
     <token name="@EXECUTABLE@">IDMapper</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>IDMapper
+  <command detect_errors="aggressive"><![CDATA[IDMapper
 
 #if $param_id:
   -id $param_id
@@ -66,7 +66,7 @@
   -consensus:annotate_ids_with_subelements
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_id" type="data" format="mzid,idxml" optional="False" label="Protein/peptide identifications file" help="(-id) "/>
     <param name="param_in" type="data" format="featurexml,consensusxml,mzq" optional="False" label="Feature map/consensus map file" help="(-in) "/>
@@ -91,10 +91,10 @@
     </expand>
   </inputs>
   <outputs>
-    <data name="param_out" metadata_source="param_in" format_source="param_in"/>
+    <data name="param_out" metadata_source="param_in" format_source="param_in" />
   </outputs>
   <help>Assigns protein/peptide identifications to features or consensus features.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDMapper.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDMapper.html</help>
 </tool>