Mercurial > repos > galaxyp > openms_featurelinkerunlabeledkd

annotate FeatureLinkerUnlabeledKD.xml @ 7:2e4b1e4a8726 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d4b74e94ddabaccec6b1c5f9540d074c39207600
author galaxyp
date Sat, 28 Oct 2017 04:19:41 -0400
parents 160875b58fef
children d9b904e05bd9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
1 <?xml version='1.0' encoding='UTF-8'?>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
3 <!--Proposed Tool Section: [Map Alignment]-->
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
4 <tool id="FeatureLinkerUnlabeledKD" name="FeatureLinkerUnlabeledKD" version="2.2.0">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
5 <description>Groups corresponding features from multiple maps.</description>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
6 <macros>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
7 <token name="@EXECUTABLE@">FeatureLinkerUnlabeledKD</token>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
8 <import>macros.xml</import>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
9 </macros>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
10 <expand macro="references"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
11 <expand macro="stdio"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
12 <expand macro="requirements"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
13 <command>FeatureLinkerUnlabeledKD
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
14
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
15 -in
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
16 #for token in $param_in:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
17 $token
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
18 #end for
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
19 #if $param_out:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
20 -out $param_out
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
21 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
22 #if $param_keep_subelements:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
23 -keep_subelements
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
24 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
25 #if $param_algorithm_rt_tol:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
26 -algorithm:rt_tol $param_algorithm_rt_tol
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
27 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
28 #if $param_algorithm_mz_tol:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
29 -algorithm:mz_tol $param_algorithm_mz_tol
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
30 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
31 #if $param_algorithm_mz_unit:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
32 -algorithm:mz_unit
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
33 #if " " in str($param_algorithm_mz_unit):
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
34 "$param_algorithm_mz_unit"
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
35 #else
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
36 $param_algorithm_mz_unit
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
37 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
38 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
39 #if $param_algorithm_warp:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
40 -algorithm:warp
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
41 #if " " in str($param_algorithm_warp):
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
42 "$param_algorithm_warp"
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
43 #else
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
44 $param_algorithm_warp
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
45 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
46 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
47 #if $param_algorithm_nr_partitions:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
48 -algorithm:nr_partitions $param_algorithm_nr_partitions
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
49 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
50 #if $adv_opts.adv_opts_selector=='advanced':
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
51 #if $adv_opts.param_force:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
52 -force
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
53 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
54 #if $adv_opts.param_algorithm_max_pairwise_log_fc:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
55 -algorithm:max_pairwise_log_fc $adv_opts.param_algorithm_max_pairwise_log_fc
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
56 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
57 #if $adv_opts.param_algorithm_min_rel_cc_size:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
58 -algorithm:min_rel_cc_size $adv_opts.param_algorithm_min_rel_cc_size
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
59 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
60 #if $adv_opts.param_algorithm_max_nr_conflicts:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
61 -algorithm:max_nr_conflicts $adv_opts.param_algorithm_max_nr_conflicts
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
62 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
63 #if $adv_opts.param_algorithm_distance_RT_exponent:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
64 -algorithm:distance_RT:exponent $adv_opts.param_algorithm_distance_RT_exponent
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
65 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
66 #if $adv_opts.param_algorithm_distance_RT_weight:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
67 -algorithm:distance_RT:weight $adv_opts.param_algorithm_distance_RT_weight
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
68 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
69 #if $adv_opts.param_algorithm_distance_MZ_exponent:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
70 -algorithm:distance_MZ:exponent $adv_opts.param_algorithm_distance_MZ_exponent
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
71 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
72 #if $adv_opts.param_algorithm_distance_MZ_weight:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
73 -algorithm:distance_MZ:weight $adv_opts.param_algorithm_distance_MZ_weight
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
74 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
75 #if $adv_opts.param_algorithm_distance_intensity_exponent:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
76 -algorithm:distance_intensity:exponent $adv_opts.param_algorithm_distance_intensity_exponent
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
77 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
78 #if $adv_opts.param_algorithm_distance_intensity_weight:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
79 -algorithm:distance_intensity:weight $adv_opts.param_algorithm_distance_intensity_weight
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
80 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
81 #if $adv_opts.param_algorithm_distance_intensity_log_transform:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
82 -algorithm:distance_intensity:log_transform
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
83 #if " " in str($adv_opts.param_algorithm_distance_intensity_log_transform):
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
84 "$adv_opts.param_algorithm_distance_intensity_log_transform"
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
85 #else
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
86 $adv_opts.param_algorithm_distance_intensity_log_transform
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
87 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
88 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
89 #if $adv_opts.param_algorithm_LOWESS_span:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
90 -algorithm:LOWESS:span $adv_opts.param_algorithm_LOWESS_span
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
91 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
92 #if $adv_opts.param_algorithm_LOWESS_num_iterations:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
93 -algorithm:LOWESS:num_iterations $adv_opts.param_algorithm_LOWESS_num_iterations
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
94 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
95 #if $adv_opts.param_algorithm_LOWESS_delta:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
96 -algorithm:LOWESS:delta $adv_opts.param_algorithm_LOWESS_delta
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
97 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
98 #if $adv_opts.param_algorithm_LOWESS_interpolation_type:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
99 -algorithm:LOWESS:interpolation_type
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
100 #if " " in str($adv_opts.param_algorithm_LOWESS_interpolation_type):
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
101 "$adv_opts.param_algorithm_LOWESS_interpolation_type"
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
102 #else
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
103 $adv_opts.param_algorithm_LOWESS_interpolation_type
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
104 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
105 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
106 #if $adv_opts.param_algorithm_LOWESS_extrapolation_type:
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
107 -algorithm:LOWESS:extrapolation_type
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
108 #if " " in str($adv_opts.param_algorithm_LOWESS_extrapolation_type):
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
109 "$adv_opts.param_algorithm_LOWESS_extrapolation_type"
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
110 #else
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
111 $adv_opts.param_algorithm_LOWESS_extrapolation_type
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
112 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
113 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
114 #end if
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
115 </command>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
116 <inputs>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
117 <param name="param_in" type="data" format="featurexml,consensusxml" multiple="true" optional="False" size="30" label="input files separated by blanks" help="(-in) ">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
118 <sanitizer>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
119 <valid initial="string.printable">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
120 <remove value="'"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
121 <remove value="&quot;"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
122 </valid>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
123 </sanitizer>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
124 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
125 <param name="param_keep_subelements" display="radio" type="boolean" truevalue="-keep_subelements" falsevalue="" checked="false" optional="True" label="For consensusXML input only: If set, the sub-features of the inputs are transferred to the output" help="(-keep_subelements) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
126 <param name="param_algorithm_rt_tol" type="float" min="0.0" optional="True" value="60.0" label="Width of RT tolerance window (sec)" help="(-rt_tol) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
127 <param name="param_algorithm_mz_tol" type="float" min="0.0" optional="True" value="15.0" label="m/z tolerance (in ppm or Da)" help="(-mz_tol) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
128 <param name="param_algorithm_mz_unit" display="radio" type="select" optional="False" value="ppm" label="Unit of m/z tolerance" help="(-mz_unit) ">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
129 <option value="ppm" selected="true">ppm</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
130 <option value="Da">Da</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
131 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
132 <param name="param_algorithm_warp" display="radio" type="select" optional="False" value="true" label="Whether or not to internally warp feature RTs using LOWESS transformation before linking (reported RTs in results will always be the original RTs)" help="(-warp) ">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
133 <option value="true" selected="true">true</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
134 <option value="false">false</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
135 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
136 <param name="param_algorithm_nr_partitions" type="integer" min="1" optional="True" value="100" label="Number of partitions in m/z space" help="(-nr_partitions) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
137 <expand macro="advanced_options">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
138 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
139 <param name="param_algorithm_max_pairwise_log_fc" type="float" value="0.5" label="Only relevant during RT alignment ('warp' set to 'true'): Maximum absolute log10 fold change between two compatible signals during compatibility graph construction" help="(-max_pairwise_log_fc) Two signals from different maps will not be connected by an edge in the compatibility graph if absolute log fold change exceeds this limit (they might still end up in the same connected component, however). Note: this does not limit fold changes in the linking stage, only during RT alignment, where we try to find high-quality alignment anchor points. Setting this to a value &lt; 0 disables the FC check"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
140 <param name="param_algorithm_min_rel_cc_size" type="float" min="0.0" max="1.0" optional="True" value="0.5" label="Only relevant during RT alignment ('warp' set to 'true'): Only connected components containing compatible features from at least max(2, (warp_min_occur * number_of_input_maps)) input maps are considered for computing the warping function" help="(-min_rel_cc_size) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
141 <param name="param_algorithm_max_nr_conflicts" type="integer" min="-1" optional="True" value="0" label="Only relevant during RT alignment ('warp' set to 'true'): Allow up to this many conflicts (features from the same map) per connected component to be used for alignment (-1 means allow any number of conflicts)" help="(-max_nr_conflicts) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
142 <param name="param_algorithm_distance_RT_exponent" type="float" min="0.0" optional="True" value="1.0" label="Normalized RT differences ([0-1], relative to 'max_difference') are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)" help="(-exponent) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
143 <param name="param_algorithm_distance_RT_weight" type="float" min="0.0" optional="True" value="1.0" label="Final RT distances are weighted by this facto" help="(-weight) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
144 <param name="param_algorithm_distance_MZ_exponent" type="float" min="0.0" optional="True" value="2.0" label="Normalized ([0-1], relative to 'max_difference') m/z differences are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)" help="(-exponent) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
145 <param name="param_algorithm_distance_MZ_weight" type="float" min="0.0" optional="True" value="1.0" label="Final m/z distances are weighted by this facto" help="(-weight) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
146 <param name="param_algorithm_distance_intensity_exponent" type="float" min="0.0" optional="True" value="1.0" label="Differences in relative intensity ([0-1]) are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)" help="(-exponent) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
147 <param name="param_algorithm_distance_intensity_weight" type="float" min="0.0" optional="True" value="1.0" label="Final intensity distances are weighted by this facto" help="(-weight) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
148 <param name="param_algorithm_distance_intensity_log_transform" display="radio" type="select" optional="False" value="enabled" label="Log-transform intensities?" help="(-log_transform) If disabled, d = |int_f2 - int_f1| / int_max. If enabled, d = |log(int_f2 + 1) - log(int_f1 + 1)| / log(int_max + 1))">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
149 <option value="enabled" selected="true">enabled</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
150 <option value="disabled">disabled</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
151 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
152 <param name="param_algorithm_LOWESS_span" type="float" min="0.0" max="1.0" optional="True" value="0.666666666667" label="Fraction of datapoints (f) to use for each local regression (determines the amount of smoothing)" help="(-span) Choosing this parameter in the range .2 to .8 usually results in a good fit"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
153 <param name="param_algorithm_LOWESS_num_iterations" type="integer" min="0" optional="True" value="3" label="Number of robustifying iterations for lowess fitting" help="(-num_iterations) "/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
154 <param name="param_algorithm_LOWESS_delta" type="float" value="-1.0" label="Nonnegative parameter which may be used to save computations (recommended value is 0.01 of the range of the input," help="(-delta) e.g. for data ranging from 1000 seconds to 2000 seconds, it could be set to 10). Setting a negative value will automatically do this"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
155 <param name="param_algorithm_LOWESS_interpolation_type" display="radio" type="select" optional="False" value="cspline" label="Method to use for interpolation between datapoints computed by lowess" help="(-interpolation_type) 'linear': Linear interpolation. 'cspline': Use the cubic spline for interpolation. 'akima': Use an akima spline for interpolation">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
156 <option value="linear">linear</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
157 <option value="cspline" selected="true">cspline</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
158 <option value="akima">akima</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
159 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
160 <param name="param_algorithm_LOWESS_extrapolation_type" display="radio" type="select" optional="False" value="four-point-linear" label="Method to use for extrapolation outside the data range" help="(-extrapolation_type) 'two-point-linear': Uses a line through the first and last point to extrapolate. 'four-point-linear': Uses a line through the first and second point to extrapolate in front and and a line through the last and second-to-last point in the end. 'global-linear': Uses a linear regression to fit a line through all data points and use it for interpolation">
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
161 <option value="two-point-linear">two-point-linear</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
162 <option value="four-point-linear" selected="true">four-point-linear</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
163 <option value="global-linear">global-linear</option>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
164 </param>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
165 </expand>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
166 </inputs>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
167 <outputs>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
168 <data name="param_out" format="consensusxml"/>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
169 </outputs>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
170 <help>Groups corresponding features from multiple maps.
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
171
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
172
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
173 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureLinkerUnlabeledKD.html</help>
160875b58fef planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
galaxyp
parents:
diff changeset
174 </tool>