comparison ExternalCalibration.xml @ 12:edc3a71b9616 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

11:b81cfcfe37f5

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Signal processing and preprocessing]-->
<tool id="ExternalCalibration" name="ExternalCalibration" version="2.2.0">
  <description>Applies an external mass recalibration.</description>
  <macros>
    <token name="@EXECUTABLE@">ExternalCalibration</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>ExternalCalibration

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/>
    <param name="param_offset" type="float" value="0.0" label="Mass offset in ppm" help="(-offset) "/>
    <param name="param_slope" type="float" value="0.0" label="Slope (dependent on m/z)" help="(-slope) "/>
    <param name="param_power" type="float" value="0.0" label="Power (dependent on m/z)" help="(-power) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Applies an external mass recalibration.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ExternalCalibration.html</help>
</tool>

12:edc3a71b9616

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
<!--Proposed Tool Section: [Signal processing and preprocessing]-->
<tool id="ExternalCalibration" name="ExternalCalibration" version="2.3.0">
  <description>Applies an external mass recalibration.</description>
  <macros>
    <token name="@EXECUTABLE@">ExternalCalibration</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[ExternalCalibration

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/>
    <param name="param_offset" type="float" value="0.0" label="Mass offset in ppm" help="(-offset) "/>
    <param name="param_slope" type="float" value="0.0" label="Slope (dependent on m/z)" help="(-slope) "/>
    <param name="param_power" type="float" value="0.0" label="Power (dependent on m/z)" help="(-power) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Applies an external mass recalibration.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ExternalCalibration.html</help>
</tool>