comparison DeMeanderize.xml @ 12:dea5b2d96340 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

11:a4bf3ca27415

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Utilities]-->
<tool id="DeMeanderize" name="DeMeanderize" version="2.2.0">
  <description>Orders the spectra of MALDI spotting plates correctly.</description>
  <macros>
    <token name="@EXECUTABLE@">DeMeanderize</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>DeMeanderize

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/>
    <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/>
    <expand macro="advanced_options">
      <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Orders the spectra of MALDI spotting plates correctly.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help>
</tool>

12:dea5b2d96340

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
<!--Proposed Tool Section: [Utilities]-->
<tool id="DeMeanderize" name="DeMeanderize" version="2.3.0">
  <description>Orders the spectra of MALDI spotting plates correctly.</description>
  <macros>
    <token name="@EXECUTABLE@">DeMeanderize</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[DeMeanderize

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/>
    <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/>
    <expand macro="advanced_options">
      <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Orders the spectra of MALDI spotting plates correctly.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DeMeanderize.html</help>
</tool>