Mercurial > repos > galaxyp > openms_databasefilter

view OMSSAAdapter.patch @ 10:21c4273d1890 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
author galaxyp
date Thu, 27 Aug 2020 23:06:04 +0000
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--- OMSSAAdapter.xml	2020-06-16 15:51:40.315400730 +0200
+++ /tmp/OMSSAAdapter.xml	2020-06-16 15:50:23.536086074 +0200
@@ -22,6 +22,7 @@
 mkdir database &&
 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
 
+makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
 ## Main program call
 
 set -o pipefail &&