comparison myrimatch.xml @ 14:0f9b9855afda draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit e28e65d5554b851fa7880f0bfe32870524852276"

13:71967a735760

            <param name="MaxDynamicMods" value="2" />
            <param name="NumChargeStates" value="5" />
            <param name="MaxResultRank" value="3" />
            <param name="MonoisotopeAdjustmentSet" value="[-1,2]" />
            <param name="UseSmartPlusThreeModel" value="false" />
            <output name="output" file="201208-378803-mm.pepXML" lines_diff="14" />
        </test>
        <test>
            <param name="input" value="input/201208-378803.mzML" />
            <param name="ProteinDatabase" value="input/cow.protein.PRG2012-subset.fasta" />
            <param name="CleavageRules" value="Trypsin" />

            <param name="MinTerminiCleavages" value="2" />
            <param name="MaxMissedCleavages" value="4" />
            <param name="NumChargeStates" value="3" />
            <param name="MaxResultRank" value="1" />
            <param name="MonoisotopeAdjustmentSet" value="0" />
            <output name="output" file="201208-378803-mm-15ppm-fully-tryptic.pepXML" lines_diff="14" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

14:0f9b9855afda

            <param name="MaxDynamicMods" value="2" />
            <param name="NumChargeStates" value="5" />
            <param name="MaxResultRank" value="3" />
            <param name="MonoisotopeAdjustmentSet" value="[-1,2]" />
            <param name="UseSmartPlusThreeModel" value="false" />
            <output name="output" file="201208-378803-mm.pepXML" lines_diff="9000" />
        </test>
        <test>
            <param name="input" value="input/201208-378803.mzML" />
            <param name="ProteinDatabase" value="input/cow.protein.PRG2012-subset.fasta" />
            <param name="CleavageRules" value="Trypsin" />

            <param name="MinTerminiCleavages" value="2" />
            <param name="MaxMissedCleavages" value="4" />
            <param name="NumChargeStates" value="3" />
            <param name="MaxResultRank" value="1" />
            <param name="MonoisotopeAdjustmentSet" value="0" />
            <output name="output" file="201208-378803-mm-15ppm-fully-tryptic.pepXML" lines_diff="200" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**