# HG changeset patch # User galaxyp # Date 1614423236 0 # Node ID adce265c7051e7afffa2bbd0d0ed195adeb5842c # Parent 385b1170b0a23f3b3ea599798eea93f4af4763e6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstatstmt commit 1272b32052ad8b986c1d3bd14f7cb9e3e921c74f" diff -r 385b1170b0a2 -r adce265c7051 msstatstmt.xml --- a/msstatstmt.xml Fri Feb 05 18:42:25 2021 +0000 +++ b/msstatstmt.xml Sat Feb 27 10:53:56 2021 +0000 @@ -1,8 +1,8 @@ protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling - 1.8.0 - 0 + 1.8.2 + 1 @@ -22,6 +22,7 @@ @@ -125,6 +189,7 @@ + @@ -156,8 +221,24 @@ + + + + + + + +
+ + + + + + +
+ -
+
@@ -171,6 +252,35 @@
+
+ + + + + + + + + + + + + + +
+ + + + + + + + + + + +
+
@@ -201,61 +311,103 @@ + + Heatmap requires more than one comparison + + + + + +
+ + + + + + + + + + + + + + + + + + + + + ’protein’ means that protein dendrogram is computed and reordered based on protein means (the order of row is changed). ’comparison’ means comparison dendrogram is computed and reordered based on comparison means (the order of comparison is changed). ’both’ means to reorder both protein and comparison. + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- + 'msstats_log' in selected_outputs - + 'msstatstmt_log' in selected_outputs 'r_script' in selected_outputs + + 'quant' in selected_outputs + 'ProfilePlot' in selected_outputs 'QCPlot' in selected_outputs - - group['group_comparison'] == 'true' + + group['group_comparison'] == 'true' and 'comparison_result' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'VolcanoPlot' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'Heatmap' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'ComparisonPlot' in group['selected_group_outputs'] @@ -277,13 +429,13 @@ - + - + @@ -296,6 +448,7 @@ + @@ -312,16 +465,24 @@ + + - + + - + + + + + + @@ -330,6 +491,23 @@ + + + + + + + + + + + + + + + + +