view test-data/201208-378803-msgf.mzid @ 0:dbc77b37e20f draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
author galaxyp
date Fri, 06 Nov 2015 14:31:57 -0500
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<?xml version="1.0" encoding="UTF-8"?>
<MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2015-11-06T18:22:31" >
<cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
    <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
    <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
</cvList>
<AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <AnalysisSoftware version="Beta (v10089)" name="MS-GF+" id="ID_software">
        <SoftwareName>
            <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
        </SoftwareName>
    </AnalysisSoftware>
</AnalysisSoftwareList>
<SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <DBSequence accession="XXX_gi|528968104|ref|XP_005212567.1|" searchDatabase_ref="SearchDB_1" length="815" id="DBSeq83632"/>
    <DBSequence accession="XXX_gi|528968106|ref|XP_005212568.1|" searchDatabase_ref="SearchDB_1" length="811" id="DBSeq84448"/>
    <DBSequence accession="XXX_gi|528968108|ref|XP_005212569.1|" searchDatabase_ref="SearchDB_1" length="766" id="DBSeq85260"/>
    <DBSequence accession="XXX_gi|115497338|ref|NP_001069884.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq93486"/>
    <DBSequence accession="gi|30466252|ref|NP_848667.1|" searchDatabase_ref="SearchDB_1" length="260" id="DBSeq46845">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30466252|ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|30794280|ref|NP_851335.1|" searchDatabase_ref="SearchDB_1" length="607" id="DBSeq43937">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30794280|ref|NP_851335.1| serum albumin precursor [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="XXX_gi|528908802|ref|XP_005199340.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56223"/>
    <DBSequence accession="XXX_gi|528908804|ref|XP_005199341.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56840"/>
    <DBSequence accession="XXX_gi|528908806|ref|XP_005199342.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq57457"/>
    <DBSequence accession="XXX_gi|528908808|ref|XP_005199343.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq58074"/>
    <DBSequence accession="XXX_gi|528908810|ref|XP_005199344.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq58690"/>
    <DBSequence accession="XXX_gi|528908812|ref|XP_609847.5|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq59287"/>
    <DBSequence accession="XXX_gi|528959647|ref|XP_005210511.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq79979"/>
    <DBSequence accession="XXX_gi|528959649|ref|XP_005210512.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq80596"/>
    <DBSequence accession="XXX_gi|528959651|ref|XP_005210513.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq81213"/>
    <DBSequence accession="XXX_gi|528959653|ref|XP_005210514.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq81830"/>
    <DBSequence accession="XXX_gi|528959655|ref|XP_005210515.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq82446"/>
    <DBSequence accession="XXX_gi|528959657|ref|XP_002689899.2|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq83043"/>
    <DBSequence accession="XXX_gi|528928354|ref|XP_005193233.1|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq64736"/>
    <DBSequence accession="gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq9505">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944676|ref|XP_005204734.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq17116">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944678|ref|XP_005204735.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq38514">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|219804516|ref|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="XXX_gi|27806505|ref|NP_776558.1|" searchDatabase_ref="SearchDB_1" length="305" id="DBSeq100520"/>
    <DBSequence accession="XXX_gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq65480"/>
    <DBSequence accession="XXX_gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq73091"/>
    <DBSequence accession="XXX_gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq94489"/>
    <DBSequence accession="gi|528993971|ref|XP_005219929.1|" searchDatabase_ref="SearchDB_1" length="768" id="DBSeq31093">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993971|ref|XP_005219929.1| PREDICTED: lactoperoxidase isoform X1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528993973|ref|XP_005219930.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq31862">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993973|ref|XP_005219930.1| PREDICTED: lactoperoxidase isoform X2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|27806851|ref|NP_776358.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq47665">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|27806851|ref|NP_776358.1| lactoperoxidase precursor [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528961840|ref|XP_005211303.1|" searchDatabase_ref="SearchDB_1" length="719" id="DBSeq49855">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961840|ref|XP_005211303.1| PREDICTED: protein KHNYN isoform X1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528961845|ref|XP_005211304.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq50575">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961845|ref|XP_005211304.1| PREDICTED: protein KHNYN isoform X2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|156523214|ref|NP_001096021.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq54922">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|156523214|ref|NP_001096021.1| protein KHNYN [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq4600">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921178|ref|XP_592304.7| PREDICTED: protein flightless-1 homolog isoformX1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq5853">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921180|ref|XP_005195747.1| PREDICTED: protein flightless-1 homolog isoform X2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq33873">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528995523|ref|XP_002695913.2| PREDICTED: protein flightless-1 homolog [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="XXX_gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq104353"/>
    <DBSequence accession="XXX_gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq107227"/>
    <DBSequence accession="XXX_gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq108359"/>
    <DBSequence accession="XXX_gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq109459"/>
    <DBSequence accession="XXX_gi|528920173|ref|XP_001788336.2|" searchDatabase_ref="SearchDB_1" length="620" id="DBSeq59954"/>
    <DBSequence accession="XXX_gi|297486082|ref|XP_002695413.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq86441"/>
    <DBSequence accession="gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq48378">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|358414198|ref|XP_002700672.2| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq51252">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966552|ref|XP_005211956.1| PREDICTED: solute carrier family 12 member 1 isoform X2 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq52384">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966554|ref|XP_005211957.1| PREDICTED: solute carrier family 12 member 1 isoform X3 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq53484">
        <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|297479727|ref|XP_002690982.1| PREDICTED: solute carrier family 12 member 1 isoform X1 [Bos taurus]" name="protein description"/>
    </DBSequence>
    <DBSequence accession="XXX_gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq60575"/>
    <DBSequence accession="XXX_gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq61828"/>
    <DBSequence accession="XXX_gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq89848"/>
    <DBSequence accession="XXX_gi|32880221|ref|NP_872593.1|" searchDatabase_ref="SearchDB_1" length="558" id="DBSeq103081"/>
    <DBSequence accession="XXX_gi|119924469|ref|XP_001252524.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq105453"/>
    <DBSequence accession="XXX_gi|28849951|ref|NP_788787.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq111574"/>
    <Peptide id="Pep1">
        <PeptideSequence>ISELFDKLDSMSVDK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep2">
        <PeptideSequence>EPISVSSQQMLK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep3">
        <PeptideSequence>TVMENFVAFVDK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep4">
        <PeptideSequence>GCESCVYPK</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="2">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
        <Modification monoisotopicMassDelta="57.021463735" location="5">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep5">
        <PeptideSequence>RMMESRQR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep6">
        <PeptideSequence>VMDFFRRIDK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep7">
        <PeptideSequence>QINYDFLTR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep8">
        <PeptideSequence>DAENTVRGR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep9">
        <PeptideSequence>EEEELRRLADSIYK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep10">
        <PeptideSequence>NGQVWEESLKRLRR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep11">
        <PeptideSequence>GFGRGCERCSFPK</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="6">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
        <Modification monoisotopicMassDelta="57.021463735" location="9">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep12">
        <PeptideSequence>SLAMEWLEDIYAR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep13">
        <PeptideSequence>RISSYDDR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep14">
        <PeptideSequence>ACQVYIQHMR</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="2">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep15">
        <PeptideSequence>TFAHTIDLLAPR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep16">
        <PeptideSequence>RGEACLDLLCESEER</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="5">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
        <Modification monoisotopicMassDelta="57.021463735" location="10">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep17">
        <PeptideSequence>YRPDLVDMER</PeptideSequence>
    </Peptide>
    <Peptide id="Pep18">
        <PeptideSequence>YDQERLR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep19">
        <PeptideSequence>LEECEQR</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="4">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep20">
        <PeptideSequence>KAMGSNMEK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep21">
        <PeptideSequence>AFYAAVAADCFRDGVR</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="10">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep22">
        <PeptideSequence>TFAHQENGK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep23">
        <PeptideSequence>METESLQTKK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep24">
        <PeptideSequence>VNSGCMAMENK</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="5">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep25">
        <PeptideSequence>KQEETERTK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep26">
        <PeptideSequence>EEEEYEVPVWYR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep27">
        <PeptideSequence>CFHAWSTFR</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="1">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep28">
        <PeptideSequence>DTEGFLEENQTK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep29">
        <PeptideSequence>EVESLMAKSR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep30">
        <PeptideSequence>GCEDCVCPK</PeptideSequence>
        <Modification monoisotopicMassDelta="57.021463735" location="2">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
        <Modification monoisotopicMassDelta="57.021463735" location="5">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
        <Modification monoisotopicMassDelta="57.021463735" location="7">
            <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
        </Modification>
    </Peptide>
    <Peptide id="Pep31">
        <PeptideSequence>ATEEQLK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep32">
        <PeptideSequence>KLVQVTGTRKGLEK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep33">
        <PeptideSequence>HDVGGFMVVSGEPK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep34">
        <PeptideSequence>QFSHPETK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep35">
        <PeptideSequence>DDSITEQNLK</PeptideSequence>
    </Peptide>
    <Peptide id="Pep36">
        <PeptideSequence>MSVADLDAR</PeptideSequence>
    </Peptide>
    <Peptide id="Pep37">
        <PeptideSequence>TEPHSFQR</PeptideSequence>
    </Peptide>
    <PeptideEvidence isDecoy="true" post="I" pre="R" end="621" start="607" peptide_ref="Pep1" dBSequence_ref="DBSeq83632" id="PepEv_84238_1_607"/>
    <PeptideEvidence isDecoy="true" post="I" pre="R" end="617" start="603" peptide_ref="Pep1" dBSequence_ref="DBSeq84448" id="PepEv_85050_1_603"/>
    <PeptideEvidence isDecoy="true" post="I" pre="R" end="572" start="558" peptide_ref="Pep1" dBSequence_ref="DBSeq85260" id="PepEv_85817_1_558"/>
    <PeptideEvidence isDecoy="true" post="I" pre="R" end="432" start="418" peptide_ref="Pep1" dBSequence_ref="DBSeq93486" id="PepEv_93903_1_418"/>
    <PeptideEvidence isDecoy="false" post="F" pre="K" end="224" start="213" peptide_ref="Pep2" dBSequence_ref="DBSeq46845" id="PepEv_47057_2_213"/>
    <PeptideEvidence isDecoy="false" post="C" pre="K" end="580" start="569" peptide_ref="Pep3" dBSequence_ref="DBSeq43937" id="PepEv_44505_3_569"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq56223" id="PepEv_56363_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq56840" id="PepEv_56980_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq57457" id="PepEv_57597_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq58074" id="PepEv_58214_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq58690" id="PepEv_58830_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq59287" id="PepEv_59427_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq79979" id="PepEv_80119_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq80596" id="PepEv_80736_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq81213" id="PepEv_81353_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq81830" id="PepEv_81970_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq82446" id="PepEv_82586_4_141"/>
    <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq83043" id="PepEv_83183_4_141"/>
    <PeptideEvidence isDecoy="true" post="S" pre="K" end="40" start="33" peptide_ref="Pep5" dBSequence_ref="DBSeq64736" id="PepEv_64768_5_33"/>
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    <PeptideEvidence isDecoy="false" post="D" pre="R" end="5165" start="5156" peptide_ref="Pep6" dBSequence_ref="DBSeq17116" id="PepEv_22271_6_5156"/>
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                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                </SpectrumIdentificationItem>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1583 experiment=2" id="SIR_107">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep34" calculatedMassToCharge="487.2405090332031" experimentalMassToCharge="487.24053955078125" chargeState="2" id="SII_107_1">
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                    <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
                    <userParam value="0" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                </SpectrumIdentificationItem>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1222 experiment=2" id="SIR_83">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep35" calculatedMassToCharge="581.782958984375" experimentalMassToCharge="582.2852172851562" chargeState="2" id="SII_83_1">
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                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-48" name="MS-GF:RawScore"/>
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                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                </SpectrumIdentificationItem>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1202 experiment=2" id="SIR_27">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep36" calculatedMassToCharge="489.2396545410156" experimentalMassToCharge="489.23614501953125" chargeState="2" id="SII_27_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_71899_36_6420"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_77400_36_4310"/>
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                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/>
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                    <userParam value="0" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                </SpectrumIdentificationItem>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=2" id="SIR_69">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep37" calculatedMassToCharge="501.24359130859375" experimentalMassToCharge="501.7442626953125" chargeState="2" id="SII_69_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_70456_37_4977"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-34" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="81" name="MS-GF:DeNovoScore"/>
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                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                </SpectrumIdentificationItem>
            </SpectrumIdentificationResult>
        </SpectrumIdentificationList>
    </AnalysisData>
</DataCollection>
</MzIdentML>