Mercurial > repos > galaxyp > msconvert

diff msconvert.xml @ 11:052798dd73dd draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 7aa618964e95528ed59eea299701e65ccacae877"
author galaxyp
date Mon, 30 Nov 2020 16:00:27 +0000
parents 06747cba5685
children
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--- a/msconvert.xml	Mon Nov 16 17:24:27 2020 +0000
+++ b/msconvert.xml	Mon Nov 30 16:00:27 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="msconvert" name="msconvert" version="@VERSION@.1">
+<tool id="msconvert" name="msconvert" version="@VERSION@.2">
   <description>Convert and/or filter mass spectrometry files</description>
   <macros>
       <import>msconvert_macros.xml</import>
@@ -6,6 +6,9 @@
   <requirements>
       <container type="docker">chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:@FULL_VERSION@</container>
   </requirements>
+  <stdio>
+    <regex match="Error writing run" source="stderr" level="fatal" description="Could not convert. Check stderr." />
+  </stdio>
   <expand macro="msconvertCommand" />
   <inputs>
       <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" />