Mercurial > repos > galaxyp > msconvert
diff test-data/small-index-filter.mzML @ 11:052798dd73dd draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 7aa618964e95528ed59eea299701e65ccacae877"
author | galaxyp |
---|---|
date | Mon, 30 Nov 2020 16:00:27 +0000 |
parents | e638f7fad66a |
children |
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--- a/test-data/small-index-filter.mzML Mon Nov 16 17:24:27 2020 +0000 +++ b/test-data/small-index-filter.mzML Mon Nov 30 16:00:27 2020 +0000 @@ -2,7 +2,7 @@ <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> <cvList count="2"> - <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.12" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/> + <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.41" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/> <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/> </cvList> <fileDescription> @@ -20,7 +20,7 @@ <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/> </sourceFile> <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///"> - <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="d795eccea21733d1e5cc192bcf2e1c389ed59c20"/> + <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8e3d422853cbd71cc5f2af6422e0893caf6447dc"/> </sourceFile> </sourceFileList> </fileDescription> @@ -30,17 +30,14 @@ <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="SN06061F"/> </referenceableParamGroup> </referenceableParamGroupList> - <softwareList count="4"> + <softwareList count="3"> <software id="Xcalibur" version="1.1 Beta 7"> <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> </software> <software id="pwiz" version="3.0.8981"> <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> </software> - <software id="pwiz_3.0.19038" version="3.0.19038"> - <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> - </software> - <software id="pwiz_3.0.19044" version="3.0.19044"> + <software id="pwiz_3.0.20287" version="3.0.20287"> <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> </software> </softwareList> @@ -85,11 +82,12 @@ </processingMethod> </dataProcessing> <dataProcessing id="pwiz_Reader_conversion"> - <processingMethod order="0" softwareRef="pwiz_3.0.19038"> + <processingMethod order="0" softwareRef="pwiz_3.0.20287"> <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> </processingMethod> - <processingMethod order="1" softwareRef="pwiz_3.0.19038"> + <processingMethod order="1" softwareRef="pwiz_3.0.20287"> <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> + <userParam name="CantWaiT (continuous wavelet transform) peak picker"/> </processingMethod> </dataProcessing> </dataProcessingList> @@ -499,18 +497,18 @@ </mzML> <indexList count="2"> <index name="spectrum"> - <offset idRef="controllerType=0 controllerNumber=1 scan=3">5697</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=4">14268</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=5">26126</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=11">36642</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=14">48113</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=15">57596</offset> - <offset idRef="controllerType=0 controllerNumber=1 scan=16">65377</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=3">5613</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=4">14184</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=5">26042</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=11">36558</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=14">48029</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=15">57512</offset> + <offset idRef="controllerType=0 controllerNumber=1 scan=16">65293</offset> </index> <index name="chromatogram"> - <offset idRef="TIC">76515</offset> + <offset idRef="TIC">76431</offset> </index> </indexList> - <indexListOffset>78465</indexListOffset> - <fileChecksum>0671bee5b37c6f8cc8afde991309fd96af7f5c3d</fileChecksum> + <indexListOffset>78381</indexListOffset> + <fileChecksum>190e7438359420dfb1a9b11d5829700a34ec36bd</fileChecksum> </indexedmzML>