comparison msconvert_macros.xml @ 3:987d73278bf9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/msconvert commit 815179cfd9754d3859239258fa30c331d5daaa41-dirty

2:8e2e7ff2b6bd

          <when input="output_type" value="ms2" format="ms2" />
          <when input="output_type" value="mgf" format="mgf" />
        </change_format>
      </data>
      <data format="csv" name="output.refinement" from_work_dir="output.refinement" label="${input.name.rsplit('.',1)[0]}.mzRefinement.tsv">
  
      </data>
    </outputs>
  </xml>
</macros>

3:987d73278bf9

          <when input="output_type" value="ms2" format="ms2" />
          <when input="output_type" value="mgf" format="mgf" />
        </change_format>
      </data>
      <data format="csv" name="output.refinement" from_work_dir="output.refinement" label="${input.name.rsplit('.',1)[0]}.mzRefinement.tsv">
        <filter>data_processing['precursor_refinement']['use_mzrefinement'] == True</filter>
      </data>
    </outputs>
  </xml>
</macros>