comparison test-data/BrukerBafTest.mzML @ 11:052798dd73dd draft default tip

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 7aa618964e95528ed59eea299701e65ccacae877"

10:06747cba5685

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    <cvList count="2">
      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.12" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/>
      <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/>
    </cvList>
    <fileDescription>
      <fileContent>
        <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>

        <userParam name="software name" value="BAF2SQL"/>
      </software>
      <software id="apexControl" version="ApexControl 3.0.0.alpha.35 (development version, April 18, 2008)">
        <cvParam cvRef="MS" accession="MS:1000706" name="apexControl" value=""/>
      </software>
      <software id="pwiz_Reader_Bruker" version="3.0.19044">
        <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
      </software>
    </softwareList>
    <instrumentConfigurationList count="1">
      <instrumentConfiguration id="IC1">
        <referenceableParamGroupRef ref="CommonInstrumentParams"/>
        <componentList count="3">
          <source order="1">
            <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
            <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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    <index name="spectrum">
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    </index>
    <index name="chromatogram">
    </index>
  </indexList>
  <indexListOffset>7590</indexListOffset>
  <fileChecksum>e6b4d51fdbe306f0823fe1cb583e7ec52629303f</fileChecksum>
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11:052798dd73dd

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  <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="BrukerBafTest" version="1.1.0">
    <cvList count="2">
      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.41" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/>
      <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/>
    </cvList>
    <fileDescription>
      <fileContent>
        <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>

        <userParam name="software name" value="BAF2SQL"/>
      </software>
      <software id="apexControl" version="ApexControl 3.0.0.alpha.35 (development version, April 18, 2008)">
        <cvParam cvRef="MS" accession="MS:1000706" name="apexControl" value=""/>
      </software>
      <software id="pwiz_Reader_Bruker" version="3.0.20287">
        <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
      </software>
    </softwareList>
    <instrumentConfigurationList count="1">
      <instrumentConfiguration id="IC1">
        <referenceableParamGroupRef ref="CommonInstrumentParams"/>
        <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="-1.3"/>
        <componentList count="3">
          <source order="1">
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          </source>

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      </spectrumList>
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          </binaryDataArrayList>
        </chromatogram>
      </chromatogramList>
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  </mzML>
  <indexList count="2">
    <index name="spectrum">
      <offset idRef="scan=1">4264</offset>
    </index>
    <index name="chromatogram">
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  </indexList>
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