mqppep_preproc: perpage.tex annotate

annotate perpage.tex @ 5:37203e501ea6 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit aa5f4a19e76ec636812865293b8ee9b196122121

author	galaxyp
date	Fri, 17 Feb 2023 22:38:08 +0000
parents	2ccb9727516b
children

rev	line source
1 2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	1 % \iffalse
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	2 %%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	3 %% perpage is part of the bigfoot bundle for critical typesetting
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	4 %% Copyright 2002--2014 David Kastrup <dak@gnu.org>
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	5 %%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	6 %% The license notice and corresponding source code for this file are
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	7 %% contained in perpage.dtx.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	8 %%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	9 % This program is free software; you can redistribute it and/or modify
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	10 % it under the terms of the GNU General Public License as published by
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	11 % the Free Software Foundation; either version 2 of the License, or
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	12 % (at your option) any later version.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	13 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	14 % This program is distributed in the hope that it will be useful,
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	15 % but WITHOUT ANY WARRANTY; without even the implied warranty of
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	16 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	17 % GNU General Public License for more details.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	18 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	19 % You should have received a copy of the GNU General Public License
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	20 % along with this program; if not, write to the Free Software
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	21 % Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	22 % \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	23 % \CheckSum{396}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	24 % \GetFileInfo{perpage.sty}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	25 % \date{\filedate}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	26 % \author{David Kastrup\thanks{\texttt{dak@gnu.org}}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	27 % \title{The \texttt{perpage} package\\Version \fileversion}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	28 % \maketitle
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	29 % \section{Description}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	30 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	31 % The \texttt{perpage} package adds the ability to reset counters per
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	32 % page and/or keep their occurences sorted in order of appearance on
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	33 % the page.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	34 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	35 % It works by attaching itself to the code for \cmd{\stepcounter} and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	36 % will then modify the given counter according to information written
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	37 % to the \|.aux\| file, which means that multiple passes may be needed.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	38 % Since it uses the internals of the \cmd{\label} mechanism, the need
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	39 % for additional passes will get announced by \LaTeX\ as ``labels may
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	40 % have changed''.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	41 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	42 % \DescribeMacro{\MakePerPage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	43 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	44 % \|\MakePerPage[2]{footnote}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	45 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	46 % will start footnote numbers with~2 on each page (the optional
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	47 % argument defaults to~1). 2~might be a strange number, unless you
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	48 % have used something like
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	49 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	50 % \|\renewcommand\thefootnote{\fnsymbol{footnote}}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	51 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	52 % and want to start off with a dagger. The starting value must not be
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	53 % less than~1 so that the counter logic can detect the reset of a
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	54 % counter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	55 % reliably.\footnote{This unfortunately means that you can't just use
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	56 % \cmd{\alph} in order to get figures on page~10 numbered as ``10'',
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	57 % ``10a'', ``10b''.}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	58 % It could be a good idea to redefine \|\@cnterr\| if you use a format
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	59 % with limited range: at the first pass, footnotes are not reset
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	60 % across pages and things like \|\fnsymbol\| will quickly run out of
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	61 % characters to use.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	62 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	63 % \DescribeMacro{\theperpage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	64 % If you want to label things also on a per page base, for example
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	65 % with
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	66 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	67 % \|\renewcommand{\thefigure}{\thepage-\arabic{figure}}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	68 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	69 % you'll have the problem that \cmd{\thepage} is updated
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	70 % asynchronously with the real page, since \TeX\ does not know which
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	71 % page the figure will end up. If you have used the \|perpage\| package
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	72 % for modifying the figure counter, however, at the point where the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	73 % counter is incremented, the macro \cmd{\theperpage} will be set to
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	74 % the correct value corresponding to the actual page location. Note
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	75 % that this macro is shared between all counters, so advancing a
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	76 % different counter under control of \|perpage\| will render
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	77 % \cmd{\thefigure} incorrect.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	78 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	79 % \DescribeMacro{\MakeSorted}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	80 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	81 % \|\MakeSorted{figure}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	82 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	83 % will make the \|figure\| counter get `sorted': this means that counter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	84 % values will be assigned in order of appearance in the output, not in
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	85 % order of appearance in the source code. For example, the order of
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	86 % interspersed one- and two-column figures might get mixed up by
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	87 % \LaTeX\ in the output. Making the counter sorted will fix the order
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	88 % to match the order of appearance. A similar problem is when
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	89 % ordinary footnotes are present in floating material (this does not
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	90 % work in standard \LaTeX, but might do so when using \|manyfoot.sty\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	91 % or \|bigfoot.sty\|): this might jumble their order in the output, and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	92 % making their counter sorted will make things appear fine again.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	93 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	94 % While this would not fix the order in the table of figures,
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	95 % fortunately the respective entries actually get written out in order
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	96 % of appearance in the output anyway, so this indeed fixes the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	97 % problem.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	98 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	99 % Manually setting the counter does not lead to reliable results in
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	100 % general; as a special case, however, resetting it to zero is
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	101 % recognized (this can also happen automatically when the counter is
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	102 % dependent on some other counter). The point where it is reset in
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	103 % the source code separates `count groups': everything in the source
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	104 % before that point is assigned sorted numbers separately from
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	105 % everything appearing behind it, and the sequence numbers start again
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	106 % with~1 with the first item appearing in the output (not the source)
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	107 % from the new count group.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	108 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	109 % \DescribeMacro{\MakeSortedPerPage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	110 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	111 % \|\MakeSortedPerPage[2]{table}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	112 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	113 % will make the table numbers restart at 2 on each page \emph{and}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	114 % will keep them sorted, to boot. Introducing new count groups by
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	115 % resetting the counter to~0 manually will not work, as it is not
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	116 % clear how to handle count groups scattered between pages. You will
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	117 % usually want to use something like
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	118 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	119 % \|\renewcommand{\thefigure}{\theperpage-\arabic{figure}}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	120 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	121 % to go along with a page-wise figure
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	122 % number.\footnote{Note the use of \cmd{\theperpage} here, see above.}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	123 % Note that it would be quite silly to start the ranges with~2: this
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	124 % is just an example for the optional argument in case that you ever
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	125 % need it.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	126 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	127 % \DescribeMacro{\AddAbsoluteCounter}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	128 % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	129 % \|\AddAbsoluteCounter{equation}\|
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	130 % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	131 % will create a counter \|absequation\| that will advance together with
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	132 % the counter \|equation\| but will not get reset along with it. This
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	133 % is not sorted into output order, but just runs along with the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	134 % sequence in the source file. As a special case, the counter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	135 % \|abspage\| is created in this manner and \cmd{\theabspage} is defined
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	136 % as an arabic number that works in the same contexts as \cmd{\page}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	137 % (namely, gets properly deferred by \cmd{\protected@write}).
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	138 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	139 % \StopEventually{}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	140 % \section{The documentation driver}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	141 % This is the default driver for typesetting the docs. Running it
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	142 % through as a separate file will include the code section. Running
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	143 % the original \|.dtx\| file through will omit the code.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	144 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	145 %<*driver>
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	146 %ACE \documentclass{ltxdoc}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	147 %ACE \usepackage{perpage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	148 %ACE \MakePerPage{footnote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	149 %ACE \begin{document}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	150 %ACE \OnlyDescription
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	151 %ACE %<driver> \AlsoImplementation
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	152 %ACE \DocInput{perpage.dtx}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	153 %ACE \end{document}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	154 %ACE %</driver>
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	155 %ACE % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	156 %ACE %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	157 %ACE % \section{The package interfaces}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	158 %ACE % First identification.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	159 %ACE % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	160 %ACE %<*style>
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	161 %ACE \NeedsTeXFormat{LaTeX2e}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	162 %ACE \ProvidesPackage{perpage}[2014/10/25 2.0 Reset/sort counters per page]
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	163 %ACE % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	164 %ACE % \begin{macro}{\pp@cl@begin}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	165 %ACE % \begin{macro}{\pp@cl@end}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	166 %ACE % These macros are considerable tricky. They are called as
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	167 %ACE % artificial `dependent' counters when the counter they are hooked
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	168 %ACE % into is advanced. The way in which those counters are called are
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	169 %ACE % one of the following:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	170 %ACE % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	171 %ACE % \begin{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	172 %ACE % \def\@stpelt#1{\global\csname c@#1\endcsname \z@}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	173 %ACE % \end{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	174 %ACE % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	175 %ACE % which is the default way of resetting a subordinate counter used
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	176 %ACE % in \LaTeX, or
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	177 %ACE % \begin{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	178 %ACE % \begin{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	179 %ACE % \def\@stpelt#1{\global\csname c@#1\endcsname \m@ne\stepcounter{#1}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	180 %ACE % \end{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	181 %ACE % \end{quote}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	182 %ACE % which is a little present from \|fixltx2e.sty\| as of 2014/05/01,
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	183 %ACE % quite complicating this feat.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	184 %ACE %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	185 %ACE % The startup code swallows either \|\global \advance\| or \|\global\|.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	186 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	187 \def\pp@cl@begin{\z@\z@ \begingroup}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	188 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	189 % The command used for ending our fake counters checks for the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	190 % \|\m@ne\| condition. We don't want to bump our auxiliary counters
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	191 % twice, so we remove the following \|\stepcounter\| command. Things
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	192 % will go haywire if there is none, of course.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	193 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	194 \def\pp@cl@end{\afterassignment\pp@cl@end@ii \count@}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	195 \def\pp@cl@end@ii{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	196 \relax
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	197 \expandafter\endgroup
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	198 \ifnum\count@<\z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	199 \expandafter\pp@cl@end@iii
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	200 \fi}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	201 \def\pp@cl@end@iii\stepcounter#1{}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	202 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	203 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	204 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	205 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	206 % \begin{macro}{\AddAbsoluteCounter}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	207 % adds a counter with prefix \|abs\| to a given counter. It typesets
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	208 % as an arabic number and never gets reset. And it is advanced
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	209 % whenever the unprefixed counter gets advanced.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	210 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	211 \newcommand\AddAbsoluteCounter[1]
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	212 {\@ifundefined{c@abs#1}{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	213 \expandafter\newcount\csname c@abs#1\endcsname
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	214 \global\value{abs#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	215 \global\expandafter\let\csname cl@abs#1\endcsname\@empty
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	216 \expandafter\xdef\csname theabs#1\endcsname{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	217 \noexpand\number \csname c@abs#1\endcsname}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	218 \global\@namedef{c@pabs@#1}{\pp@cl@begin
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	219 \stepcounter{abs#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	220 \pp@cl@end}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	221 \@addtoreset{pabs@#1}{#1}}{}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	222 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	223 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	224 % \begin{macro}{\c@perpage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	225 % We now create the absolute counter \|perpage\|:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	226 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	227 %ACE \AddAbsoluteCounter{page}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	228 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	229 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	230 % \begin{macro}{\theabspage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	231 % This has to be specially defined so that it will expand as late as
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	232 % \cmd{\thepage} does. Several commands set the latter temporarily
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	233 % to \cmd{\relax} in order to inhibit expansion, and we will more or
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	234 % less imitate its behavior when found set in that manner.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	235 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	236 \def\theabspage{\ifx\thepage\relax
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	237 \noexpand\theabspage
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	238 \else
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	239 \number\c@abspage
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	240 \fi}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	241 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	242 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	243 % Here follow the three commands for defining counters per page:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	244 % \begin{macro}{\MakePerPage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	245 % This creates a counter reset per page. An optional second
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	246 % argument specifies the starting point of the sequence.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	247 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	248 \newcommand*\MakePerPage[2][\@ne]{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	249 \pp@makeperpage{#2}\c@pchk@{#1}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	250 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	251 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	252 % \begin{macro}{\MakeSorted}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	253 % This will create a counter sorted in appearance on the page. No
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	254 % optional argument is given: set the counter to a desired starting
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	255 % value manually if you need to. Resetting it to zero will start a
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	256 % new count group, setting it to other values is probably not reliable.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	257 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	258 \newcommand*\MakeSorted[1]{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	259 \setcounter{#1}{\z@}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	260 \pp@makeperpage{#1}\c@schk@{\@ne}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	261 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	262 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	263 % \begin{macro}{\MakeSortedPerPage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	264 % This will create output in sorted order, reset on each page. Use
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	265 % an optional argument to specify the starting value per page. This
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	266 % must not be~0, unfortunately.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	267 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	268 \newcommand*\MakeSortedPerPage[2][\@ne]{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	269 \pp@makeperpage{#2}\c@spchk@{#1}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	270 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	271 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	272 % All of those must only occur in the preamble since we can't do the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	273 % initialization of the counter values otherwise.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	274 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	275 \@onlypreamble\MakePerPage
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	276 \@onlypreamble\MakeSorted
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	277 \@onlypreamble\MakeSortedPerPage
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	278 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	279 % \section{Internals}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	280 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	281 % It works in the following manner: The basic work is done through
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	282 % attaching help code to the counter's reset list. Each counter has
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	283 % an associated absolute id that is counted through continuously and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	284 % is never reset, thus providing a unique frame of reference. Sorted
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	285 % and perpage counters work by writing out information to the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	286 % \|.aux\| file.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	287 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	288 % The information we maintain for each counter while processing the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	289 % source file are:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	290 % \begin{itemize}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	291 % \item The absolute counter id.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	292 % \item The last counter value so that we can check whether the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	293 % sequence has been interrupted.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	294 % \item The current scope id.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	295 % \item Its starting value.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	296 % \end{itemize}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	297 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	298 % The information written to the file consists of:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	299 % \begin{itemize}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	300 % \item The absolute counter id.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	301 % \item The current scope id.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	302 % \item The scope's starting value.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	303 % \item The absolute counter id of a superior counter.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	304 % \end{itemize}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	305 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	306 % Sorted counters work by writing out the current absolute id and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	307 % range id into the \|.aux\| file each time the counter gets incremented.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	308 % Whenever the counter is changed in a manner different from being
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	309 % incremented, a new counter scope gets started. Each counter scope
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	310 % has its own independently assigned counter numbers and is associated
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	311 % with its absolute id starting value. So as each counter is
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	312 % incremented, we write out the triple of current absolute id, counter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	313 % scope and initial value for the scope. Scope changes when a value
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	314 % assigned from the file differs from the `natural' value. When the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	315 % file is read in, counter movements are tracked. Each counter that
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	316 % does not have its `natural' value, is having a counter setting
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	317 % recorded.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	318 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	319 % The stuff works by adding a pseudo-reset counter to the counter's
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	320 % dependent counter list.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	321 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	322 % \begin{macro}{\pp@makeperpage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	323 % This does the relevant things for modifying a counter. It defines
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	324 % its reset value, it defines the correspoding absolute counter.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	325 % The absolute counter serves a double function: it is also used for
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	326 % assigning numbers while reading the \|.aux\| file. For this purpose
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	327 % it is assigned the initialized values here and in the enddocument
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	328 % hook (which is called before rereading the \|.aux\| file and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	329 % checking for changed labels), while the counter is reset to zero
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	330 % at the start of the document.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	331 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	332 \def\pp@makeperpage#1#2#3{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	333 \global\expandafter\mathchardef\csname c@pp@r@#1\endcsname=#3\relax
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	334 \global\@namedef{c@pchk@#1}{#2{#1}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	335 \newcounter{pp@a@#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	336 \setcounter{pp@a@#1}{#3}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	337 \addtocounter{pp@a@#1}\m@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	338 \@addtoreset{pchk@#1}{#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	339 \AtBeginDocument{\setcounter{pp@a@#1}\z@}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	340 \edef\next{\noexpand\AtEndDocument
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	341 {\noexpand\setcounter{pp@a@#1}{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	342 \number\value{pp@a@#1}}}}\next}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	343 \@onlypreamble\pp@makeperpage
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	344 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	345 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	346 % \begin{macro}{\pp@chkvlist}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	347 % Check for an empty vertical list. If we have one, that is worth
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	348 % warning about.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	349 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	350 \def\pp@chkvlist{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	351 \ifcase
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	352 \ifvmode
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	353 \ifx\lastnodetype\@undefined
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	354 \ifdim-\@m\p@=\prevdepth\ifdim\lastskip=\z@\ifnum\lastpenalty=\z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	355 \@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	356 \fi\fi\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	357 \else
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	358 \ifnum\lastnodetype=\m@ne \@ne \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	359 \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	360 \fi \z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	361 \or
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	362 \PackageWarning{perpage}{\string\stepcounter\space probably at start of
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	363 vertical list:^^JYou might need to use \string\leavevmode\space
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	364 before it to avoid vertical shifts}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	365 \fi}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	366 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	367 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	368 % \begin{macro}{\pp@fetchctr}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	369 % \begin{macro}{\theperpage}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	370 % This fetches the counter information and puts it into
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	371 % \cmd{\pp@label}, \cmd{\pp@page} and (globally) into
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	372 % \cmd{\theperpage}.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	373 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	374 \def\pp@fetchctr#1{\expandafter\expandafter\expandafter\pp@fetchctrii
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	375 \csname pp@r@#1@\number\value{pp@a@#1}\endcsname
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	376 {}{}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	377
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	378 \global\let\theperpage\@empty
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	379
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	380 \def\pp@fetchctrii#1#2#3{\def\pp@label{#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	381 \def\pp@page{#2}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	382 \gdef\theperpage{#3}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	383 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	384 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	385 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	386 % Ok, let's put together all the stuff for the simplest case, counters
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	387 % numbered per page without sorting:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	388 % \begin{macro}{\c@pchk@}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	389 % This is the code buried into to the reset list. When the reset
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	390 % list is executed in the context of advancing a counter, we call
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	391 % something like
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	392 % \begin{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	393 %\global\c@pchk@{countername}\z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	394 % \end{verbatim}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	395 % since the reset list expected a counter here instead of some
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	396 % generic command. That is the reason we start off this command by
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	397 % giving \cmd{\global} something to chew on.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	398 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	399 \def\c@pchk@#1{\pp@cl@begin
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	400 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	401 % Now we fetch the page value corresponding to the not yet adjusted
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	402 % value of the absolute counter to see whether the previous counter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	403 % advance happened on the same page.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	404 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	405 \pp@fetchctr{#1}\let\next\pp@page
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	406 \addtocounter{pp@a@#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	407 \pp@fetchctr{#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	408 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	409 % We compare the pages for current and last advance of the counter.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	410 % If they differ, we reset the counter to its starting value. We do
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	411 % the same if the counter has been reset to zero manually, likely by
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	412 % being in the reset list of some other counter.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	413 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	414 \ifcase\ifx\next\pp@page\else\@ne\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	415 \ifnum\value{#1}=\z@\@ne\fi\z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	416 \else
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	417 \setcounter{#1}{\value{pp@r@#1}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	418 \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	419 \pp@writectr\pp@pagectr{#1}{\noexpand\theabspage}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	420 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	421 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	422 % \begin{macro}{\pp@writectr}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	423 % This is the common ending of all pseudo reset counters. It writes
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	424 % out an appropriate command to the \|.aux\| file with all required
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	425 % information. We try to replicate any sentinel kerns or penalties.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	426 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	427 \def\pp@writectr#1#2#3{\edef\next{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	428 \string#1{#2}{\number\value{pp@a@#2}}{#3}{\noexpand\thepage}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	429 \pp@chkvlist
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	430 \dimen@=\lastkern
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	431 \ifdim\dimen@=\z@ \else \unkern\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	432 \count@=\lastpenalty
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	433 \protected@write\@auxout{}{\next}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	434 \ifdim\dimen@=\z@
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	435 \penalty \ifnum\count@<\@M \@M \else \count@ \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	436 \else \kern\dimen@\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	437 \pp@cl@end}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	438 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	439 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	440 % \begin{macro}{\pp@labeldef}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	441 % This is a helper macro.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	442 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	443 \def\pp@labeldef#1#2#3#4#5{\@newl@bel{pp@r@#2}{#3}{{#1}{#4}{#5}}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	444 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	445 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	446 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	447 % \begin{macro}{\pp@pagectr}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	448 % This is the workhorse for normal per page counters. It is called
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	449 % whenever the \|.aux\| file is read in and establishes the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	450 % appropriate information for each counter advancement in a
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	451 % pseudolabel.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	452 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	453 \def\pp@pagectr#1#2#3#4{\@ifundefined{c@pp@a@#1}{}{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	454 \addtocounter{pp@a@#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	455 \expandafter\pp@labeldef\expandafter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	456 {\number\value{pp@a@#1}}{#1}{#2}{#3}{#4}}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	457 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	458 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	459 % \begin{macro}{\c@schk@}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	460 % This is called for implementing sorted counters. Sorted counters
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	461 % maintain a ``count group'', and the values in each count group are
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	462 % numbered independently from that of other count groups. Whenever
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	463 % a counter is found to have been reset, it will start a new count
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	464 % group. At the end of document, the count group counters need to
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	465 % get reset, too, so that the check for changed \|.aux\| files will
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	466 % still work.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	467 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	468 \def\c@schk@#1{\pp@cl@begin
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	469 \addtocounter{pp@a@#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	470 \ifnum\value{#1}=\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	471 \expandafter\xdef\csname pp@g@#1\endcsname{\number\value{pp@a@#1}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	472 \edef\next{\noexpand\AtEndDocument{\global\let
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	473 \expandafter\noexpand\csname pp@g@#1@\number\value{pp@a@#1}\endcsname
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	474 \relax}}\next
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	475 \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	476 \pp@fetchctr{#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	477 \ifx\pp@page\@empty
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	478 \else \setcounter{#1}{\pp@label}\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	479 \pp@writectr\pp@spagectr{#1}{\csname pp@g@#1\endcsname}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	480 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	481 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	482 % \begin{macro}{\pp@spagectr}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	483 % This is the code advancing the respective value of the appropriate
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	484 % count group and assigning the label.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	485 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	486 \def\pp@spagectr#1#2#3#4{\@ifundefined{c@pp@a@#1}{}{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	487 \count@0\csname pp@g@#1@#3\endcsname
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	488 \advance\count@\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	489 \expandafter\xdef\csname pp@g@#1@#3\endcsname{\number\count@}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	490 \expandafter\pp@labeldef\expandafter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	491 {\number\count@}{#1}{#2}{#3}{#4}}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	492 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	493 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	494 % \begin{macro}{\c@spchk@}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	495 % And this finally is the counter advance code for sorted counters
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	496 % per page. Basically, we just use one count group per page.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	497 % Resetting a counter manually will not introduce a new count group,
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	498 % and it would be hard to decide what to do in case count groups and
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	499 % page positions overlap.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	500 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	501 \def\c@spchk@#1{\pp@cl@begin
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	502 \addtocounter{pp@a@#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	503 \pp@fetchctr{#1}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	504 \ifx\pp@page\@empty
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	505 \else \setcounter{#1}{\pp@label}\fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	506 \pp@writectr\pp@ppagectr{#1}{\noexpand\theabspage}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	507 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	508 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	509 % \begin{macro}{\pp@ppagectr}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	510 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	511 \def\pp@ppagectr#1#2#3#4{\@ifundefined{c@pp@a@#1}{}{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	512 \def\next{#3}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	513 \expandafter\ifx\csname pp@page@#1\endcsname\next
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	514 \addtocounter{pp@a@#1}\@ne
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	515 \else
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	516 \setcounter{pp@a@#1}{\value{pp@r@#1}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	517 \fi
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	518 \global\expandafter\let\csname pp@page@#1\endcsname\next
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	519 \expandafter\pp@labeldef\expandafter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	520 {\number\value{pp@a@#1}}{#1}{#2}{#3}{#4}}}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	521 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	522 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	523 % \begin{macro}{\@testdef}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	524 % \LaTeX's current (2007) definition of this macro causes save stack
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	525 % overflow. We fix this by an additional grouping. Delay to the
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	526 % beginning of document to keep Babel happy.
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	527 % \begin{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	528 \AtBeginDocument{%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	529 \begingroup
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	530 \@testdef{}{undefined}{}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	531 \expandafter
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	532 \endgroup
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	533 \ifx\@undefined\relax
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	534 \let\pp@@testdef\@testdef
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	535 \def\@testdef#1#2#3{{\pp@@testdef{#1}{#2}{#3}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	536 \if@tempswa\aftergroup\@tempswatrue\fi}}%
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	537 \fi}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	538 %</style>
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	539 % \end{macrocode}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	540 % \end{macro}
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	541 %
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	542 % \Finale
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	543 % \endinput
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	544 % Local Variables:
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	545 % mode: doctex
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	546 % TeX-master: "perpage.drv"
2ccb9727516b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be galaxyp parents: diff changeset	547 % End:

Mercurial > repos > galaxyp > mqppep_preproc

annotate perpage.tex @ 5:37203e501ea6 draft default tip