# HG changeset patch
# User galaxyp
# Date 1446733328 18000
# Node ID 1c8071d2ae6fafe76d05f42b2944be587f3e1e19
# Parent  a5a1c3367774fc02adc4616d3f5d7bb379ab146a
Uploaded

diff -r a5a1c3367774 -r 1c8071d2ae6f morpheus.xml
--- a/morpheus.xml	Thu Nov 05 09:09:04 2015 -0500
+++ b/morpheus.xml	Thu Nov 05 09:22:08 2015 -0500
@@ -132,7 +132,7 @@
         -mt=\${GALAXY_SLOTS:-4}
         && ( basepath=`grep 'Input Data File:' input.log.txt | sed 's/Input Data File: \(.*\)input.mzml/\1/'`; 
              for i in summary.tsv input.log.txt input.PSMs.tsv input.unique_peptides.tsv input.protein_groups.tsv input.pep.xml; 
-             do cat \$i | sed "s#\${basepath}input.mzml#$input.name#" | sed "s#\${basepath}$searchdb_name#$search.name#" > output_reports/\$i; 
+             do cat \$i | sed "s#\${basepath}input.mzml#$input.name#" | sed "s#\${basepath}$searchdb_name#$searchdb.name#" > output_reports/\$i; 
              done )
     ]]></command>
     <inputs>