# HG changeset patch # User galaxyp # Date 1613769849 0 # Node ID d0485bab76b805bb4a7f384a8dc269f071121468 # Parent f9c1f29d971172f02da00805ca254f70a067d483 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 5e4f8567c0145de8c6f9344fe4ee4c3bf2a81e59" diff -r f9c1f29d9711 -r d0485bab76b8 macros.xml --- a/macros.xml Sat Apr 11 15:48:50 2020 +0000 +++ b/macros.xml Fri Feb 19 21:24:09 2021 +0000 @@ -133,7 +133,7 @@ - > '$log' #end if - && mv '$mqpar' combined/txt/mqpar.xml + && mv mqpar.xml combined/txt/mqpar.xml #if 'output_all' in $output: && tar -zcf '$output_all' ./combined/txt @@ -102,7 +102,7 @@ - - - + + @@ -153,6 +153,7 @@ + + + + + /mnt/galaxy/data/003/dataset_3981.dat + >([^\s]*) + >(.*) + + + + + + + + + + + + 350000 + True + 0.005 + False + False + False + False + True + True + revert + all + True + 4600 + True + True + True + 0 + 6 + 0 + 40 + True + False + False + False + False + 0 + 0 + False + False + False + False + 0 + False + False + False + False + False + False + Species + False + 3 + False + True + False + True + False + False + + + + 7 + 0.01 + 0.01 + 0.01 + 0.01 + 8 + 25 + True + 1 + 1 + 0 + False + True + False + + 2 + True + + Oxidation (M) + Acetyl (Protein N-term) + + 0 + 0 + 0 + 0 + 15 + 0 + 1 + + + 200 + False + True + True + True + True + True + True + False + False + True + False + 0 + 20 + + none + False + session1 + 1.6.10.43 + + + 2 + + + + + -1.79769313486232E+308 + 1.79769313486232E+308 + False + False + False + False + False + False + False + + /mnt/galaxy/tmp/job_working_directory/003/3118/working/BSA_min_21.mzXML + /mnt/galaxy/tmp/job_working_directory/003/3118/working/BSA_min_22.mzxml + + + + + + + 32767 + 32767 + + + False + False + + + 0 + 0 + + + + + + False + False + + + 0 + 7 + 2 + 2 + False + False + True + 1 + NaN + NaN + MatchFromAndTo + 0 + 8 + True + 35 + True + 1.4 + 1.2 + False + 0 + + + + Standard + False + 0 + False + 3 + 6 + 100000 + 0 + 0 + False + False + True + False + 2 + 0 + 5 + 0 + 1 + 0 + 0 + 0 + 0 + + Carbamidomethyl (C) + + + Trypsin/P + + + + 0 + False + False + + Oxidation (M) + Acetyl (Protein N-term) + + False + + + + + + + + + False + + + + + True + 20 + 4.5 + True + 2 + True + 0.6 + 0.6 + True + True + False + 70 + False + + 0 + 0 + 0 + NaN + NaN + False + NaN + NaN + 0 + 0 + 0 + 0 + True + False + True + False + + 0 + 6 + False + 0 + 0 + 0 + 0 + + + + + + + + + + False + True + 0.75 + 0 + + + + + + + + 20 + 20 + 0.85 + 2 + 2 + 7 + 2.99 + False + 3 + + + + + FTMS + 20 + True + 7 + True + 10 + True + True + 12 + 100 + True + True + True + True + False + + + ITMS + 0.5 + False + 0.15 + False + 0.25 + False + False + 8 + 100 + True + True + True + True + False + + + TOF + 40 + True + 0.01 + False + 0.02 + False + True + 10 + 100 + True + True + True + True + False + + + Unknown + 20 + True + 7 + True + 10 + True + True + 12 + 100 + True + True + True + True + False + + + + + CID + False + 1 + 1 + 1 + False + 1 + KRH + + + HCD + False + 1 + 1 + 1 + False + 1 + KRH + + + ETD + False + 1 + 1 + 1 + False + 1 + KRH + + + PQD + False + 1 + 1 + 1 + False + 1 + KRH + + + ETHCD + False + 1 + 1 + 1 + False + 1 + KRH + + + ETCID + False + 1 + 1 + 1 + False + 1 + KRH + + + UVPD + False + 1 + 1 + 1 + False + 1 + KRH + + + Unknown + False + 1 + 1 + 1 + False + 1 + KRH + + + +