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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847
author galaxyp
date Fri, 19 Jul 2019 19:13:52 -0400
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MTD	mzTab-version	1.0.0
MTD	mzTab-mode	Complete
MTD	mzTab-type	Identification
MTD	title	null
MTD	description	null
MTD	software[1]	[MS, MS:1001583, MaxQuant,1.6.3.4]
COM	[, CHEMMOD:57.0214637236, Carbamidomethyl (C),]	
MTD	fixed_mod[1]	[, , CHEMMOD:57.0214637236,]
MTD	fixed_mod[1]-site	C
MTD	fixed_mod[1]-position	Anywhere
COM	[, CHEMMOD:15.9949146221, Oxidation (M),]	
MTD	variable_mod[1]	[, , CHEMMOD:15.9949146221,]
MTD	variable_mod[1]-site	M
MTD	variable_mod[1]-position	Anywhere
MTD	protein_search_engine_score[1]	[MS, MS:1002375, protein group-level combined FDRscore, ]
MTD	peptide_search_engine_score[1]	[MS, MS:1001250, local FDR, ]
MTD	psm_search_engine_score[1]	[MS, MS:1002338, Andromeda:score,  ]
MTD	psm_search_engine_score[2]	[MS, MS:1002995, Andromeda:PEP,  ]
MTD	ms_run[1]-format	[MS, MS:1002996, Andromeda:apl file format, ]
MTD	ms_run[1]-location	file://d:/shared/dglaetzer/maxquant_tool/test2/two_mzxml_short/combined/andromeda/allspectra.cid.ftms.iso_0.apl
MTD	ms_run[1]-id_format	[MS, MS:1000776, scan number only nativeID format, ]
MTD	ms_run[2]-format	[MS, MS:1002996, Andromeda:apl file format, ]
MTD	ms_run[2]-location	file://d:/shared/dglaetzer/maxquant_tool/test2/two_mzxml_short/combined/andromeda/allspectra.cid.ftms.iso_1.apl
MTD	ms_run[2]-id_format	[MS, MS:1000776, scan number only nativeID format, ]

PRH	accession	description	taxid	species	database	database_version	search_engine	best_search_engine_score[1]	search_engine_score[1]_ms_run[1]	search_engine_score[1]_ms_run[2]	num_psms_ms_run[1]	num_psms_ms_run[2]	num_peptides_distinct_ms_run[1]	num_peptides_distinct_ms_run[2]	num_peptides_unique_ms_run[1]	num_peptides_unique_ms_run[2]	ambiguity_members	modifications	protein_coverage	opt_global_cv_MS:1002217_decoy_peptide 
PRT	CON__P02769	null	null	null	null	null	[MS, MS:1002337, Andromeda, 1.6.3.4]	24.4111732500507	null	null	null	null	null	null	null	null	CON__P02769, bsa	null	0.064	0
PRT	CON__P01030	null	null	null	null	null	[MS, MS:1002337, Andromeda, 1.6.3.4]	6.12946896793655	null	null	null	null	null	null	null	null	CON__P01030, CON__ENSEMBL:ENSBTAP00000007350	null	0.006	0
PRT	CON__P02676	null	null	null	null	null	[MS, MS:1002337, Andromeda, 1.6.3.4]	5.91168885522525	null	null	null	null	null	null	null	null	CON__P02676	null	0.028	0
PRT	CON__Q29443	null	null	null	null	null	[MS, MS:1002337, Andromeda, 1.6.3.4]	6.27089675212204	null	null	null	null	null	null	null	null	CON__Q29443, CON__Q0IIK2	null	0.018	0
PRT	CON__Q6IFU6	null	null	null	null	null	[MS, MS:1002337, Andromeda, 1.6.3.4]	5.79558497906794	null	null	null	null	null	null	null	null	CON__Q6IFU6	null	0.035	0

PSH	sequence	PSM_ID	accession	unique	database	database_version	search_engine	search_engine_score[1]	search_engine_score[2]	modifications	retention_time	charge	exp_mass_to_charge	calc_mass_to_charge	spectra_ref	pre	post	start	end	opt_global_cv_MS:1000776_scan_number_only_nativeID_format	opt_global_cv_MS:1002217_decoy_peptide 
PSM	DDPHACYSTVFDK	1	CON__P02769	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00879376465973971	null	0.480878333333333	2	777.83	777.83011	ms_run[1]:index=121	K	L	387	399	82	0
PSM	DDPHACYSTVFDK	1	bsa	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00879376465973971	null	0.480878333333333	2	777.83	777.83011	ms_run[1]:index=121	K	L	387	399	82	0
PSM	ECCHGDLLECADDR	2	CON__P02769	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	4.06002529511453	0.0122549387437507	null	0.342775	3	583.89	583.89236	ms_run[1]:index=147	K	A	267	280	60	0
PSM	ECCHGDLLECADDR	2	bsa	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	4.06002529511453	0.0122549387437507	null	0.342775	3	583.89	583.89236	ms_run[1]:index=147	K	A	267	280	60	0
PSM	ECCHGDLLECADDR	3	CON__P02769	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.0122549387437507	null	0.385801666666667	3	583.89	583.89236	ms_run[1]:index=146	K	A	267	280	67	0
PSM	ECCHGDLLECADDR	3	bsa	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.0122549387437507	null	0.385801666666667	3	583.89	583.89236	ms_run[1]:index=146	K	A	267	280	67	0
PSM	ECCHGDLLECADDR	4	CON__P02769	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	3.64492303257886	0.0122549387437507	null	0.523276666666667	2	875.34	875.3349	ms_run[1]:index=148	K	A	267	280	90	0
PSM	ECCHGDLLECADDR	4	bsa	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	3.64492303257886	0.0122549387437507	null	0.523276666666667	2	875.34	875.3349	ms_run[1]:index=148	K	A	267	280	90	0
PSM	GCTTTNSPSTPCQNCSR	5	CON__Q6IFU6	1	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.0160108733047593	null	0.263751666666667	2	964.38	964.3882	ms_run[1]:index=170	K	I	5	21	45	0
PSM	LGQYTSPVAK	6	CON__P01030	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	9.21405366890568	0.00742217230209436	null	0.0572883333333333	2	532.29	532.29276	ms_run[1]:index=35	K	R	689	698	10	0
PSM	LGQYTSPVAK	6	CON__ENSEMBL:ENSBTAP00000007350	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	9.21405366890568	0.00742217230209436	null	0.0572883333333333	2	532.29	532.29276	ms_run[1]:index=35	K	R	689	698	10	0
PSM	TSDANINWNNLK	7	CON__Q29443	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00535924051359045	null	0.393891666666667	3	463.9	463.89676	ms_run[1]:index=84	K	D	438	449	67	0
PSM	TSDANINWNNLK	7	CON__Q0IIK2	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00535924051359045	null	0.393891666666667	3	463.9	463.89676	ms_run[1]:index=84	K	D	438	449	67	0
PSM	TSDANINWNNLK	8	CON__Q29443	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	2.86688527480472	0.00535924051359045	null	0.578475	3	463.9	463.89676	ms_run[1]:index=85	K	D	438	449	98	0
PSM	TSDANINWNNLK	8	CON__Q0IIK2	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	2.86688527480472	0.00535924051359045	null	0.578475	3	463.9	463.89676	ms_run[1]:index=85	K	D	438	449	98	0
PSM	TSDANINWNNLK	9	CON__Q29443	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00535924051359045	null	0.41019	2	695.34	695.3415	ms_run[1]:index=86	K	D	438	449	70	0
PSM	TSDANINWNNLK	9	CON__Q0IIK2	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.00535924051359045	null	0.41019	2	695.34	695.3415	ms_run[1]:index=86	K	D	438	449	70	0
PSM	YCGVPGEYWLGNDR	10	CON__P02676	1	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	0	0.0122549387437507	null	0.469416666666667	3	562.58	562.58407	ms_run[1]:index=140	K	I	319	332	80	0
PSM	YCGVPGEYWLGNDR	11	CON__P02676	1	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	3.64492303257886	0.0122549387437507	null	0.540946666666667	2	843.37	843.37247	ms_run[1]:index=141	K	I	319	332	92	0
PSM	YICDNQDTISSK	12	CON__P02769	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	24.3433433825462	3.60031720952497E-09	null	0.258266666666667	2	722.33	722.32466	ms_run[1]:index=94	K	L	286	297	44	0
PSM	YICDNQDTISSK	12	bsa	0	null	null	[MS, MS:1002338, Andromeda:score, 1.6.3.4]	24.3433433825462	3.60031720952497E-09	null	0.258266666666667	2	722.33	722.32466	ms_run[1]:index=94	K	L	286	297	44	0