comparison mqwrapper.py @ 1:461ba35a313f draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 2131f017e9303599ed672797ffd6e9b00ab1245d

0:4ce8694766e3

fnames_with_ext = [(a if a.endswith(ftype)
                    else os.path.splitext(a)[0] + ftype)
                   for a in filenames]

for f, l in zip(files, fnames_with_ext):
    os.link(f, l)

# build mqpar.xml
mqpar_in = os.path.join(os.getcwd(), 'mqpar.xml')
subprocess.run(('maxquant', '-c', mqpar_in))
mqpar_out = args['mqpar_out'] if args['mqpar_out'] != 'None' else mqpar_in

1:461ba35a313f

fnames_with_ext = [(a if a.endswith(ftype)
                    else os.path.splitext(a)[0] + ftype)
                   for a in filenames]

for f, l in zip(files, fnames_with_ext):
    os.symlink(f, l)

# build mqpar.xml
mqpar_in = os.path.join(os.getcwd(), 'mqpar.xml')
subprocess.run(('maxquant', '-c', mqpar_in))
mqpar_out = args['mqpar_out'] if args['mqpar_out'] != 'None' else mqpar_in