Mercurial > repos > galaxyp > maxquant
comparison README.rst @ 15:41a49d4b2bc3 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 80eb79844e82da22ce44a2ee9c9f202bed0b94d1
| author | galaxyp |
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| date | Fri, 22 Jul 2022 07:09:30 +0000 |
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| 1 | |
| 2 GalaxyP - MaxQuant | |
| 3 ================== | |
| 4 | |
| 5 | |
| 6 * Home: https://github.com/galaxyproteomics/tools-galaxyp/ | |
| 7 * Tool ID: ``maxquant`` | |
| 8 * Tool Type: ``default`` | |
| 9 | |
| 10 Description | |
| 11 ----------- | |
| 12 | |
| 13 Wrapper for the MaxQuant version available in conda. | |
| 14 | |
| 15 Updating | |
| 16 -------- | |
| 17 | |
| 18 MaxQuant often changes the layout of its parameters file. | |
| 19 So changes to the code are likely to be necessary when | |
| 20 updating to a new version of MaxQuant. The init.py script | |
| 21 can be used to initialize the tool with a new list of | |
| 22 modifications or enzymes. From the tool dir run: | |
| 23 | |
| 24 ./init.py -m MODIFICATIONS.XML -e ENZYMES.XML | |
| 25 | |
| 26 The location of these xml files usually is: | |
| 27 ANACONDA_DIR/bin/conf/ |