Mercurial > repos > galaxyp > mass_spectrometry_imaging_segmentations
comparison segmentation_tool.xml @ 3:ff5a4a795db6 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_segmentation commit 06c2b45d8644b1d7fc01622a5c59dcbf8886d0f1
| author | galaxyp |
|---|---|
| date | Mon, 23 Apr 2018 17:17:52 -0400 |
| parents | 76d0244b1bbc |
| children | 38afc994e3cc |
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| 2:76d0244b1bbc | 3:ff5a4a795db6 |
|---|---|
| 1 <tool id="mass_spectrometry_imaging_segmentations" name="MSI segmentation" version="1.7.0.2"> | 1 <tool id="mass_spectrometry_imaging_segmentations" name="MSI segmentation" version="1.7.0.3"> |
| 2 <description>tool for spatial clustering</description> | 2 <description>tool for spatial clustering</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> | 4 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> |
| 5 <requirement type="package" version="2.2.1">r-gridextra</requirement> | 5 <requirement type="package" version="2.2.1">r-gridextra</requirement> |
| 6 <requirement type="package" version="2.23-15">r-kernsmooth</requirement> | 6 <requirement type="package" version="2.23-15">r-kernsmooth</requirement> |
| 311 </sanitizer> | 311 </sanitizer> |
| 312 </param> | 312 </param> |
| 313 </repeat> | 313 </repeat> |
| 314 </inputs> | 314 </inputs> |
| 315 <outputs> | 315 <outputs> |
| 316 <data format="pdf" name="segmentationimages" from_work_dir="segmentationpdf.pdf" label = "${tool.name} on $infile.display_name"/> | 316 <data format="pdf" name="segmentationimages" from_work_dir="segmentationpdf.pdf" label = "${tool.name} ${on_string}"/> |
| 317 <data format="tabular" name="mzfeatures" label="mzfeatures ${tool.name} on $infile.display_name"/> | 317 <data format="tabular" name="mzfeatures" label="Mz features ${on_string}"/> |
| 318 <data format="tabular" name="pixeloutput" label="pixels ${tool.name} on $infile.display_name"/> | 318 <data format="tabular" name="pixeloutput" label="Pixels ${on_string}"/> |
| 319 </outputs> | 319 </outputs> |
| 320 <tests> | 320 <tests> |
| 321 <test> | 321 <test> |
| 322 <param name="infile" value="" ftype="imzml"> | 322 <param name="infile" value="" ftype="imzml"> |
| 323 <composite_data value="Example_Continuous.imzML"/> | 323 <composite_data value="Example_Continuous.imzML"/> |