# HG changeset patch
# User galaxyp
# Date 1509734157 14400
# Node ID 87f2a3c9425bae8def789485816ccb61354d4c8d
# Parent  bc374b8b9d761fe20fe10da3037e7287d84f1648
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 91950fbabd1db1b35e77bfa26c0d2ffc941ffceb

diff -r bc374b8b9d76 -r 87f2a3c9425b idpassemble.xml
--- a/idpassemble.xml	Thu Nov 02 16:32:35 2017 -0400
+++ b/idpassemble.xml	Fri Nov 03 14:35:57 2017 -0400
@@ -29,11 +29,11 @@
             -SummarizeSources 1
             
             #if $AssignSourceHierarchy
-            -AssignSourceHierarchy $AssignSourceHierarchy
+            -AssignSourceHierarchy '$AssignSourceHierarchy'
             #end if
             
             #if $IsobaricSampleMapping
-            -IsobaricSampleMapping $IsobaricSampleMapping
+            -IsobaricSampleMapping '$IsobaricSampleMapping'
             #end if
             
             #if len($input) > 1
diff -r bc374b8b9d76 -r 87f2a3c9425b macros.xml
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-cm-filtered.idpDB
Binary file test-data/201208-378803-cm-filtered.idpDB has changed
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-cm.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-cm.pep.xml
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-embeddedGenesAndQuantitation.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-embeddedGenesAndSpectra.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-mm-filtered.idpDB
Binary file test-data/201208-378803-mm-filtered.idpDB has changed
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-mm.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-msgf-filtered.idpDB
Binary file test-data/201208-378803-msgf-filtered.idpDB has changed
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803-msgf.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/201208-378803.idpDB
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/assembly.tsv
--- a/test-data/assembly.tsv	Thu Nov 02 16:32:35 2017 -0400
+++ b/test-data/assembly.tsv	Fri Nov 03 14:35:57 2017 -0400
@@ -1,1 +1,1 @@
-/Test	201208-378803
+/Test	201208-378803
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/input/201208-378803.mzML
diff -r bc374b8b9d76 -r 87f2a3c9425b test-data/mapping.tsv
--- a/test-data/mapping.tsv	Thu Nov 02 16:32:35 2017 -0400
+++ b/test-data/mapping.tsv	Fri Nov 03 14:35:57 2017 -0400
@@ -1,1 +1,1 @@
-/Test	S1,S2,S3,Reference
+/Test	S1,S2,S3,Reference