Mercurial > repos > galaxyp > hirieftools
comparison pi_db_split.xml @ 2:c093af6f2a6c draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/pi_db_tools commit 71a4265d11aef48342142b8cf2caa86f79f9a554
| author | galaxyp |
|---|---|
| date | Fri, 01 Sep 2017 03:14:37 -0400 |
| parents | 70757404c4f6 |
| children |
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| 1:70757404c4f6 | 2:c093af6f2a6c |
|---|---|
| 1 <tool id="pi_db_split" name="Split peptide database" version="1.1"> | 1 <tool id="pi_db_split" name="Split peptide database" version="1.2"> |
| 2 <description>into pI separated fractions</description> | 2 <description>into pI separated fractions</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package">numpy</requirement> | 4 <requirement type="package">numpy</requirement> |
| 5 <requirement type="package" version="3.6">python</requirement> | 5 <requirement type="package" version="3.6">python</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command> | 7 <command detect_errors="exit_code"> |
| 8 <![CDATA[ | 8 <![CDATA[ |
| 9 mkdir pi_fr_out && cd pi_fr_out && | 9 mkdir pi_fr_out && cd pi_fr_out && |
| 10 python '$__tool_directory__/pi_database_splitter.py' -i '$pipeptides' -p '$peptable' | 10 python '$__tool_directory__/pi_database_splitter.py' -i '$pipeptides' -p '$peptable' |
| 11 #for $strip in $strips | 11 #for $strip in $strips |
| 12 #if not $strip.peptable_pattern or str($strip.peptable_pattern) in $peptable.element_identifier | 12 #if not $strip.peptable_pattern or str($strip.peptable_pattern) in $peptable.element_identifier |