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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/feature_alignment commit ceaef1a06c8600f9a042fc8f80f5b3fae75d4445-dirty
author galaxyp
date Sat, 30 May 2015 05:27:37 -0400
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transition_group_record	decoy	transition_group_id	run_id	filename	RT	id	Sequence	FullPeptideName	ProteinName	assay_rt	delta_rt	leftWidth	norm_RT	peak_apices_sum	rightWidth	aggr_Peak_Area	peak_group_rank	d_score	m_score	iRT_of_assay	comment	Charge	aggr_Peak_Apex	aggr_Fragment_Annotation	sn_ratio	Intensity	Comment: The following columns are for mProphet	Tr	iRT_empirical	iRT_predicted	protein	transition_group_pepseq
strep_align/Strep0_Repl1_R02/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	0	split_hroest_K120808_combined.featureXML	4157.2848086113	f_14033255530503723792	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4132.719167642	24.5656409693	4134.8798828125	61.8076522795	3884	4172.4301757813	5502.000000;5889.000000;2222.000000;2512.000000;1460.000000;1020.000000	1	4.6430186544	2.70626830372887e-06	61.1	cluster TRUE	2	5502.000000;5889.000000;2222.000000;2512.000000;1460.000000;1020.000000	5502.000000;5889.000000;2222.000000;2512.000000;1460.000000;1020.000000	1	120		4157.2848086113	4157.2848086113	4147.2848086113	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R02/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	0	split_hroest_K120808_combined.featureXML	4236.7508741707	f_13169006090966118307	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4132.719167642	104.0317065287	4199.740234375	64.1108995811	8628	4261.1899414063	791.000000;18367.000000;540.000000;22477.000000;750.000000;560.000000	2	-3.1954820554	0.0005	61.1	cluster FALSE	2	791.000000;18367.000000;540.000000;22477.000000;750.000000;560.000000	791.000000;18367.000000;540.000000;22477.000000;750.000000;560.000000	1	250		4236.7508741707	4236.7508741707	4226.7508741707	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R02/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	0	split_hroest_K120808_combined.featureXML	4396.94273305	f_17032480123683661142	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4132.719167642	264.223565408	4377.25	68.7539061792	5567	4431.8701171875	280.000000;1351.000000;280.000000;920.000000;31052.000000;860.000000	4	-3.3249147171	0.3220580725	61.1	NA	2	280.000000;1351.000000;280.000000;920.000000;31052.000000;860.000000	280.000000;1351.000000;280.000000;920.000000;31052.000000;860.000000	1	150		4396.94273305	4396.94273305	4386.94273305	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R02/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	0	split_hroest_K120808_combined.featureXML	4103.0075035304	f_17254733915653094913	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4132.719167642	-29.7116641116	4083.669921875	60.2344769173	460	4110.9799804688	30.000000;380.000000;230.000000;970.000000;490.000000;90.000000	3	-1.1571588178	0.2855822027	61.1	NA	2	30.000000;380.000000;230.000000;970.000000;490.000000;90.000000	30.000000;380.000000;230.000000;970.000000;490.000000;90.000000	1	180		4103.0075035304	4103.0075035304	4093.0075035304	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R03/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	1	split_hroest_K120808_combined.featureXML	4237.834612717	f_7259477005084093710	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4148.8927695564	88.9418431607	4220.2099609375	63.6912797891	5950	4257.759765625	100.000000;11940.000000;90.000000;14746.000000;310.000000;100.000000	1	-1.2978089457	0.005	61.1	cluster FALSE but FDR below 1%	2	100.000000;11940.000000;90.000000;14746.000000;310.000000;100.000000	100.000000;11940.000000;90.000000;14746.000000;310.000000;100.000000	1	130		4237.834612717	4237.834612717	4227.834612717	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R03/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	1	split_hroest_K120808_combined.featureXML	4167.1282356709	f_1946229642962775443	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4148.8927695564	18.2354661146	4128.0400390625	61.629163735	967	4196.3198242188	2368.000000;3613.000000;1050.000000;1430.000000;750.000000;440.000000	2	1.2528426368	0.0590706643	61.1	cluster TRUE	2	2368.000000;3613.000000;1050.000000;1430.000000;750.000000;440.000000	2368.000000;3613.000000;1050.000000;1430.000000;750.000000;440.000000	1	50		4167.1282356709	4167.1282356709	4157.1282356709	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R03/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	1	split_hroest_K120808_combined.featureXML	4204.9589978683	f_546336782280825114	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4148.8927695564	56.0662283119	4199.7299804688	62.7324789567	180	4216.7998046875	390.000000;180.000000;30.000000;160.000000;130.000000;70.000000	4	-1.9709294327	0.3276775879	61.1	NA	2	390.000000;180.000000;30.000000;160.000000;130.000000;70.000000	390.000000;180.000000;30.000000;160.000000;130.000000;70.000000	1	220		4204.9589978683	4204.9589978683	4194.9589978683	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl1_R03/split_hroest_K120808_all_peakgroups_for_pedros.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	1	split_hroest_K120808_combined.featureXML	3949.633676731	f_1127496644798128693	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4148.8927695564	-199.2590928254	3933.4499511719	55.2860439144	381	3957.3500976563	220.000000;240.000000;40.000000;180.000000;1062.000000;20.000000	3	-1.8881030993	0.325723046	61.1	NA	2	220.000000;240.000000;40.000000;180.000000;1062.000000;20.000000	220.000000;240.000000;40.000000;180.000000;1062.000000;20.000000	1	120		3949.633676731	3949.633676731	3939.633676731	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R02/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	2	split_hroest_K120808_combined.featureXML	4457.7861318076	f_7695999890006491586	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4186.7999231532	270.9862086544	4438.6899414063	68.9583866448	3605	4486.4799804688	130.000000;1110.000000;150.000000;430.000000;19792.000000;780.000000	4	-1.8914462466	0.3350264606	61.1	NA	2	130.000000;1110.000000;150.000000;430.000000;19792.000000;780.000000	130.000000;1110.000000;150.000000;430.000000;19792.000000;780.000000	1	130		4457.7861318076	4457.7861318076	4447.7861318076	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R02/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	2	split_hroest_K120808_combined.featureXML	4225.5372693098	f_7995570933545899074	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4186.7999231532	38.7373461565	4199.7202148438	62.2205422539	997	4250.9301757813	1983.000000;3069.000000;1130.000000;1100.000000;710.000000;410.000000	2	0.440521846	0.3	61.1	cluster TRUE	2	1983.000000;3069.000000;1130.000000;1100.000000;710.000000;410.000000	1983.000000;3069.000000;1130.000000;1100.000000;710.000000;410.000000	1	100		4225.5372693098	4225.5372693098	4215.5372693098	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R02/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	2	split_hroest_K120808_combined.featureXML	4297.2778585929	f_13533807518639064717	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4186.7999231532	110.4779354397	4261.169921875	64.3018309281	5641	4315.7900390625	620.000000;10240.000000;320.000000;14723.000000;780.000000;310.000000	1	-1.4000010917	0.15	61.1	cluster FALSE	2	620.000000;10240.000000;320.000000;14723.000000;780.000000;310.000000	620.000000;10240.000000;320.000000;14723.000000;780.000000;310.000000	1	80		4297.2778585929	4297.2778585929	4287.2778585929	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R02/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	2	split_hroest_K120808_combined.featureXML	4000.5531316006	f_15970037542975291475	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4186.7999231532	-186.2467915526	3988.0700683594	55.6934570662	512	4011.9599609375	420.000000;420.000000;60.000000;290.000000;1273.000000;20.000000	3	-1.6324942375	0.3278895544	61.1	NA	2	420.000000;420.000000;60.000000;290.000000;1273.000000;20.000000	420.000000;420.000000;60.000000;290.000000;1273.000000;20.000000	1	20		4000.5531316006	4000.5531316006	3990.5531316006	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R03/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	3	split_hroest_K120808_combined.featureXML	4161.797222448	f_10695898602322980677	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4125.0490419982	36.7481804498	4134.8701171875	62.1581880861	1624	4186.080078125	3522.000000;4438.000000;1680.000000;1940.000000;1291.000000;690.000000	2	2.8268775648	0.1	61.1	cluster TRUE	2	3522.000000;4438.000000;1680.000000;1940.000000;1291.000000;690.000000	3522.000000;4438.000000;1680.000000;1940.000000;1291.000000;690.000000	1	130		4161.797222448	4161.797222448	4151.797222448	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R03/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	3	split_hroest_K120808_combined.featureXML	4242.7563496649	f_6146381832908670245	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4125.0490419982	117.7073076667	4213.3901367188	64.4992677521	13028	4264.58984375	540.000000;21788.000000;450.000000;30697.000000;870.000000;240.000000	1	-1.2538849522	0.1	61.1	cluster FALSE	2	540.000000;21788.000000;450.000000;30697.000000;870.000000;240.000000	540.000000;21788.000000;450.000000;30697.000000;870.000000;240.000000	1	60		4242.7563496649	4242.7563496649	4232.7563496649	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R03/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	3	split_hroest_K120808_combined.featureXML	4402.5892306441	f_17231814870828860734	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4125.0490419982	277.5401886459	4384.080078125	69.1211247371	6969	4425.0400390625	160.000000;1521.000000;320.000000;550.000000;35766.000000;520.000000	4	-2.1006079776	0.3411849331	61.1	NA	2	160.000000;1521.000000;320.000000;550.000000;35766.000000;520.000000	160.000000;1521.000000;320.000000;550.000000;35766.000000;520.000000	1	40		4402.5892306441	4402.5892306441	4392.5892306441	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR
strep_align/Strep0_Repl2_R03/split_hroest_K120808_all_peakgroups_forpedro.xls:17365_TLDTAAEKIVETATR/3_run0 0 0	FALSE	17365_TLDTAAEKIVETATR/3_run0	3	split_hroest_K120808_combined.featureXML	3950.661382069	f_17124686349881931625	TLDTAAEKIVETATR	TLDTAAEKIVETATR	Spyo_Exp3652_DDB_SeqID_324814	4125.0490419982	-174.3876599292	3943.6899414063	56.0528131928	610	3960.7600097656	360.000000;410.000000;30.000000;320.000000;1331.000000;40.000000	3	-1.1356280226	0.3069359946	61.1	NA	2	360.000000;410.000000;30.000000;320.000000;1331.000000;40.000000	360.000000;410.000000;30.000000;320.000000;1331.000000;40.000000	1	20		3950.661382069	3950.661382069	3940.661382069	Spyo_Exp3652_DDB_SeqID_324814	TLDTAAEKIVETATR