Mercurial > repos > galaxyp > feature_alignment

comparison feature_alignment.xml @ 6:8465b6579490 draft

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Uploaded
author galaxyp
date Thu, 21 May 2015 12:25:48 -0400
parents 0fc499958d0b
children 6ed38421e503
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5:df90ac321955 6:8465b6579490
9 </stdio> 9 </stdio>
10 <version_command>feature_alignment.py --version</version_command> 10 <version_command>feature_alignment.py --version</version_command>
11 <command> 11 <command>
12 <![CDATA[ 12 <![CDATA[
13 feature_alignment.py 13 feature_alignment.py
14 --in #'" "'.join([ $file for $file in $inputs ])# 14 --in #echo '" "'.join([ $file for $file in $inputs ]) #
15 --file_format $oformat 15 --file_format $oformat
16 #if str($out) == "openswath": 16 #if str($out) == "openswath":
17 --out $out 17 --out $out
18 #end if 18 #end if
19 --out_matrix out_matrix.tsv 19 --out_matrix out_matrix.tsv
26 --iso_max_rt_diff $iso_max_rt_diff 26 --iso_max_rt_diff $iso_max_rt_diff
27 --frac_selected $frac_selected 27 --frac_selected $frac_selected
28 --method $method 28 --method $method
29 --matrix_output_method $matrix_output_method 29 --matrix_output_method $matrix_output_method
30 --realign_method $realign_method 30 --realign_method $realign_method
31
32 && 31 &&
33 mv out_matrix.tsv $out_matrix 32 mv out_matrix.tsv $out_matrix
34 33
35 ]]></command> 34 ]]></command>
36 <inputs> 35 <inputs>