# HG changeset patch
# User galaxyp
# Date 1652799047 0
# Node ID 4419b0f9bf799ccff6af7bc5ac4f6584178bcbc5
# Parent 1571f129b9a01857462a618b5f56d9a4e12c9849
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 0bb79ebbaf73fe6e902f6ef20cc9c9741063bf34
diff -r 1571f129b9a0 -r 4419b0f9bf79 encyclopedia_fasta_to_prosit_csv.xml
--- a/encyclopedia_fasta_to_prosit_csv.xml Wed Apr 20 11:46:30 2022 +0000
+++ b/encyclopedia_fasta_to_prosit_csv.xml Tue May 17 14:50:47 2022 +0000
@@ -4,7 +4,7 @@
macros.xml
-
-
-
-
+
+
+
+
+ ^\d([.]\d+)?$
+
+
+
#if $options.percolator.set_percolator == 'yes'
- #if str($options.percolator.percolatorVersionNumber)
- -percolatorVersionNumber $options.percolator.percolatorVersionNumber
+ #if str($options.percolator.percolatorVersion)
+ -percolatorVersion $options.percolator.percolatorVersion
#end if
#if str($options.percolator.percolatorProteinThreshold)
-percolatorProteinThreshold $options.percolator.percolatorProteinThreshold
@@ -310,6 +315,8 @@
#if str($options.percolator.percolatorThreshold)
-percolatorThreshold $options.percolator.percolatorThreshold
#end if
+ #else
+ -percolatorVersion "3.01"
#end if
@@ -525,6 +532,12 @@
@FASTA_INPUT@
@TARGET_FASTA@
@LIB_INPUT@
+ @MASS_LIBRARY_TOLERANCE@
+ @PERCOLATOR_OPTIONS@
+ @PEAK_OPTIONS@
+ @WINDOW_OPTIONS@
+ @MODIFICATION_OPTIONS@
+ @SEARCH_OPTIONS@
-a $a
-o chromatogram_library.elib
&& ls -l ./*.* inputs/*