Mercurial > repos > galaxyp > encyclopedia_fasta_to_prosit_csv
comparison encyclopedia_fasta_to_prosit_csv.xml @ 2:4419b0f9bf79 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 0bb79ebbaf73fe6e902f6ef20cc9c9741063bf34
author | galaxyp |
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date | Tue, 17 May 2022 14:50:47 +0000 |
parents | 1571f129b9a0 |
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1:1571f129b9a0 | 2:4419b0f9bf79 |
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2 <description>Create Prosit CSV Input From a Protein FASTA</description> | 2 <description>Create Prosit CSV Input From a Protein FASTA</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
8 EncyclopeDIA -convert -fastatoprositcsv | 8 EncyclopeDIA -convert -fastatoprositcsv |
9 -i '$i' | 9 -i '$i' |
10 -numberOfThreadsUsed "\${GALAXY_SLOTS:-4}" | 10 -numberOfThreadsUsed "\${GALAXY_SLOTS:-4}" |
11 -minCharge $minCharge | 11 -minCharge $minCharge |
12 -maxCharge $maxCharge | 12 -maxCharge $maxCharge |