Mercurial > repos > galaxyp > encyclopedia
comparison macros.xml @ 1:8f2555d3687f draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 7567c513925da467828c9f0dc1746a16b4adb062
| author | galaxyp |
|---|---|
| date | Fri, 20 Sep 2019 11:01:22 -0400 |
| parents | 39618cb4669f |
| children |
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| 0:39618cb4669f | 1:8f2555d3687f |
|---|---|
| 18 #set $l_name = None | 18 #set $l_name = None |
| 19 #set $t_name = None | 19 #set $t_name = None |
| 20 </token> | 20 </token> |
| 21 | 21 |
| 22 <xml name="scan_input"> | 22 <xml name="scan_input"> |
| 23 <param argument="-i" type="data" format="mzml" label="Spectrum file, .mzml or .dia"/> | 23 <param argument="-i" type="data" format="imzml,mzml" label="Spectrum file, .mzml or .dia"/> |
| 24 </xml> | 24 </xml> |
| 25 <token name="@LINK_SCAN_INPUT@"><![CDATA[ | 25 <token name="@LINK_SCAN_INPUT@"><![CDATA[ |
| 26 #set $i_name = $i.display_name | 26 #set $i_name = $i.display_name |
| 27 ln -s '$i' '$i_name' && | 27 ln -s '$i' '$i_name' && |
| 28 ]]></token> | 28 ]]></token> |
| 29 <token name="@SCAN_INPUT@"> | 29 <token name="@SCAN_INPUT@"> |
| 30 -i '$i_name' | 30 -i '$i_name' |
| 31 </token> | 31 </token> |
| 32 | 32 |
| 33 <xml name="scan_inputs"> | 33 <xml name="scan_inputs"> |
| 34 <param argument="-i" type="data" format="mzml" multiple="true" label="Spectrum file, .mzml or .dia"/> | 34 <param argument="-i" type="data" format="imzml,mzml" multiple="true" label="Spectrum file, .mzml or .dia"/> |
| 35 </xml> | 35 </xml> |
| 36 <token name="@LINK_SCAN_INPUTS@"><![CDATA[ | 36 <token name="@LINK_SCAN_INPUTS@"><![CDATA[ |
| 37 #set $inputs_dir = 'inputs' | 37 #set $inputs_dir = 'inputs' |
| 38 mkdir -p $inputs_dir && | 38 mkdir -p $inputs_dir && |
| 39 #for $sf in $i | 39 #for $sf in $i |