Mercurial > repos > galaxyp > dbbuilder
comparison dbbuilder.xml @ 2:0127e0bdf937 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dbbuilder commit 7480b93ed88eb017041b16e1181a481f7b3334d3
| author | galaxyp |
|---|---|
| date | Tue, 02 May 2017 08:51:48 -0400 |
| parents | a2c05481cae2 |
| children | 643d9192e3f5 |
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| 1:a2c05481cae2 | 2:0127e0bdf937 |
|---|---|
| 12 <!-- http://maxquant.org/contaminants.zip --> | 12 <!-- http://maxquant.org/contaminants.zip --> |
| 13 <!-- ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz--> | 13 <!-- ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz--> |
| 14 <command> | 14 <command> |
| 15 <![CDATA[ | 15 <![CDATA[ |
| 16 #if $source.from == "uniprot" | 16 #if $source.from == "uniprot" |
| 17 #set $url = "http://www.uniprot.org/uniprot/?query=taxonomy%3a%22" + str($source.taxon) + "%22" + str($source.set) + str($source.reviewed) + "&force=yes&format=fasta" + str($source.include_isoform) | 17 #set $url = 'http://www.uniprot.org/uniprot/?query=taxonomy:"' + str($source.taxon) + '"' + str($source.set) + str($source.reviewed) + '&force=yes&format=fasta' + str($source.include_isoform) |
| 18 #set $type = "direct" | 18 #set $type = "direct" |
| 19 #elif $source.from == "cRAP" | 19 #elif $source.from == "cRAP" |
| 20 ##set $url = "ftp://ftp.thegpm.org/fasta/cRAP/crap.fasta" | 20 ##set $url = "ftp://ftp.thegpm.org/fasta/cRAP/crap.fasta" |
| 21 #set $url = "https://raw.githubusercontent.com/pravs3683/cRAP/master/cRAP_protein_database.fasta" | 21 #set $url = "https://raw.githubusercontent.com/pravs3683/cRAP/master/cRAP_protein_database.fasta" |
| 22 #set $type = "direct" | 22 #set $type = "direct" |