diff data_manager/data_manager_eggnog.xml @ 0:bcb556946648 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_eggnog.xml	Mon Nov 11 11:47:28 2019 -0500
@@ -0,0 +1,33 @@
+<tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
+    <description>eggnog data</description>
+    <macros>
+        <import>eggnog_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version_command"/>
+    <command detect_errors="exit_code"><![CDATA[
+#import json, os
+#set params = json.loads(open(str($out_file)).read())
+#set install_path = $params['output_data'][0]['extra_files_path'].encode('ascii', 'replace')
+@DOWNLOAD_CMD@
+    ]]></command>
+    <inputs>
+        <expand macro="data_manager_params"/>
+    </inputs>
+    <expand macro="data_manager_outputs"/>
+    <tests>
+        <expand macro="data_manager_test"/>
+    </tests>
+    <help><![CDATA[
+This tool downloads eggnog data using download_eggnog_data.py 
+and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs.
+The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/
+The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ 
+can vary from 1G to 80G in size.
+
+This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml 
+in directory eggnog_data/<eggnog data version>/.
+The eggnog version is queried from the downloaded SQlite eggnog.db from table version.  
+    ]]></help>
+    <expand macro="citations"/>
+</tool>