diff data_manager/data_manager_eggnog.xml @ 1:a0625e4f566b draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"

--- a/data_manager/data_manager_eggnog.xml	Mon Nov 11 11:47:28 2019 -0500
+++ b/data_manager/data_manager_eggnog.xml	Fri Feb 19 18:51:53 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
+<tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09">
     <description>eggnog data</description>
     <macros>
         <import>eggnog_macros.xml</import>
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
 #import json, os
 #set params = json.loads(open(str($out_file)).read())
-#set install_path = $params['output_data'][0]['extra_files_path'].encode('ascii', 'replace')
+#set install_path = $params['output_data'][0]['extra_files_path']
 @DOWNLOAD_CMD@
     ]]></command>
     <inputs>
@@ -19,15 +19,14 @@
         <expand macro="data_manager_test"/>
     </tests>
     <help><![CDATA[
-This tool downloads eggnog data using download_eggnog_data.py 
-and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs.
-The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/
-The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ 
+This tool downloads eggnog data using download_eggnog_data.py
+and populates the data tables: eggnog_mapper_db_versioned.
+The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/
 can vary from 1G to 80G in size.
 
-This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml 
+This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml
 in directory eggnog_data/<eggnog data version>/.
-The eggnog version is queried from the downloaded SQlite eggnog.db from table version.  
+The eggnog version is queried from the downloaded SQlite eggnog.db from table version.
     ]]></help>
     <expand macro="citations"/>
 </tool>