diff data_manager/customProDB_annotation.xml @ 0:3c2c36beddb1 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/customProDB_annotation.xml	Fri Jan 15 15:52:56 2016 -0500
@@ -0,0 +1,31 @@
+<tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1">
+    <description>builder</description>
+    <command interpreter="Rscript --vanilla">customProDB_annotation.R
+      --outputFile "${out_file}"
+      --dbkey "${dbkey}"
+      2&gt;&amp;1
+    </command>
+    <stdio>
+        <exit_code range=":-1" />
+        <exit_code range="1:" />
+    </stdio>
+    <inputs>
+        <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence">
+            <options from_data_table="all_fasta"/>
+        </param>
+        <param type="text" name="sequence_name" value="" label="Name of sequence" />
+        <param type="text" name="sequence_id" value="" label="ID for sequence" />-->
+        <param type="text" name="dbkey" value="" label="UCSC dbKey for reference genome" />
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json"/>
+    </outputs>
+
+    <help>
+
+.. class:: infomark
+
+**Notice:** If you leave name, description, or id blank, it will be generated automatically. 
+
+    </help>
+</tool>