comparison test-data/112_auto_combined.imzml @ 5:f0b847eadeb2 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
author galaxyp
date Fri, 13 Dec 2019 18:45:39 +0000
parents 95fc17c26ade
children f64aadd66808
comparison
equal deleted inserted replaced
4:889c9e3a2526 5:f0b847eadeb2
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