# HG changeset patch # User galaxyp # Date 1604441605 0 # Node ID 3a385a462997cea4ce941b74f9c68e8a2d9d5b0a # Parent 0559bc3e9d8003fe94c6576956ac9d7bc9c1686d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit e499c9124d3fd85a7fc47b95c206ce91a5e3678c-dirty" diff -r 0559bc3e9d80 -r 3a385a462997 macros.xml --- a/macros.xml Wed May 13 17:56:49 2020 +0000 +++ b/macros.xml Tue Nov 03 22:13:25 2020 +0000 @@ -1,10 +1,10 @@ - 2.4.0 + 2.6.0 bioconductor-cardinal - r-base + @@ -117,6 +117,13 @@ 0, for if conditions - npeaks= sum(as.matrix(spectra(msidata))>0, na.rm=TRUE) + npeaks= sum(int_matrix>0) ## Number of NA in spectra matrix - NAcount = sum(is.na(spectra(msidata))) - ## Number of NA in spectra matrix - infcount = sum(is.infinite(as.matrix(spectra(msidata)))) + infcount = sum(is.infinite(int_matrix)) ## Number of duplicated coordinates dupl_coord = sum(duplicated(coord(msidata))) properties = c("Number of m/z features", @@ -175,7 +180,7 @@ - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format `_ - Analyze7.5 (upload hdr, img and t2m file via the "composite" function) - - Cardinal "MSImageSet" data saved as .RData + - Cardinal "MSImageSet" or "MSImagingExperiment" saved as .RData ]]> - + diff -r 0559bc3e9d80 -r 3a385a462997 mz_images.xml --- a/mz_images.xml Wed May 13 17:56:49 2020 +0000 +++ b/mz_images.xml Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ - + mass spectrometry imaging m/z heatmaps @@ -28,6 +28,9 @@ @DATA_PROPERTIES@ +##in case it exists, remove z-dimension: +coord(msidata)\$z <- NULL + ##################################### read and filter input m/z ############## input_list = read.delim("$calibrant_file", header = $calibrant_header, stringsAsFactors = FALSE) @@ -64,7 +67,8 @@ for (mass in 1:length(inputmz)){ print(image(msidata, mz=inputmz[mass],plusminus = $plusminus_dalton, normalize.image="$normalize_image", contrast.enhance = "$image_contrast", - smooth.image = "$image_smoothing", strip=$strip, colorkey=$colorkey, colorscale=$colorscale, ylim= c(maximumy,minimumy)))} + smooth.image = "$image_smoothing", colorkey=$colorkey, colorscale=$colorscale, ylim= c(maximumy,minimumy))) + title(inputnames[mass], adj = 0.5, line = 1)} ## optional svg output with original coordinates @@ -99,7 +103,7 @@ legend("$overlay_cond.legend_position", fill=colourvector, - legend=as.numeric(sort(as.character(inputmz)))) + legend=as.numeric(inputmz)) #end if } else {print("The input m/z were invalid")} @@ -134,7 +138,6 @@ - @@ -182,7 +185,6 @@ - @@ -195,7 +197,6 @@ - @@ -207,7 +208,6 @@ - @@ -219,7 +219,6 @@ - @@ -228,7 +227,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/112_auto_combined.ibd Binary file test-data/112_auto_combined.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/112_auto_combined.imzml --- a/test-data/112_auto_combined.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/112_auto_combined.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/112_auto_combined.imzml.txt --- a/test-data/112_auto_combined.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/112_auto_combined.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 556 --rw-r--r-- 1 meli meli 537552 Apr 21 12:46 ibd --rw-r--r-- 1 meli meli 27497 Apr 21 12:46 imzml +-rw-rw-r-- 1 meli meli 537552 Aug 30 13:50 ibd +-rw-rw-r-- 1 meli meli 27497 Aug 30 13:50 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/112_auto_combined_QC.pdf Binary file test-data/112_auto_combined_QC.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined.ibd Binary file test-data/123_combined.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined.imzml --- a/test-data/123_combined.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/123_combined.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined.imzml.txt --- a/test-data/123_combined.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/123_combined.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 452 --rw-r--r-- 1 meli meli 436764 Apr 21 12:41 ibd --rw-r--r-- 1 meli meli 22855 Apr 21 12:41 imzml +-rw-rw-r-- 1 meli meli 436764 Aug 30 13:46 ibd +-rw-rw-r-- 1 meli meli 22855 Aug 30 13:46 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined_QC.pdf Binary file test-data/123_combined_QC.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined_auto.ibd Binary file test-data/123_combined_auto.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined_auto.imzml --- a/test-data/123_combined_auto.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/123_combined_auto.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined_auto.imzml.txt --- a/test-data/123_combined_auto.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/123_combined_auto.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 452 --rw-r--r-- 1 meli meli 436764 Apr 21 12:43 ibd --rw-r--r-- 1 meli meli 22860 Apr 21 12:43 imzml +-rw-rw-r-- 1 meli meli 436764 Aug 30 13:48 ibd +-rw-rw-r-- 1 meli meli 22860 Aug 30 13:48 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/123_combined_auto.pdf Binary file test-data/123_combined_auto.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/12_combined.ibd Binary file test-data/12_combined.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/12_combined.imzml --- a/test-data/12_combined.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/12_combined.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/12_combined.imzml.txt --- a/test-data/12_combined.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/12_combined.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 352 --rw-r--r-- 1 meli meli 335976 Apr 21 12:45 ibd --rw-r--r-- 1 meli meli 18225 Apr 21 12:45 imzml +-rw-rw-r-- 1 meli meli 335976 Aug 30 13:49 ibd +-rw-rw-r-- 1 meli meli 18225 Aug 30 13:49 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/12_combined_QC.pdf Binary file test-data/12_combined_QC.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/2123_auto_combined.ibd Binary file test-data/2123_auto_combined.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/2123_auto_combined.imzml --- a/test-data/2123_auto_combined.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/2123_auto_combined.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/2123_auto_combined.imzml.txt --- a/test-data/2123_auto_combined.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/2123_auto_combined.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 656 --rw-r--r-- 1 meli meli 638340 Apr 21 12:46 ibd --rw-r--r-- 1 meli meli 32132 Apr 21 12:46 imzml +-rw-rw-r-- 1 meli meli 638340 Aug 30 13:50 ibd +-rw-rw-r-- 1 meli meli 32132 Aug 30 13:50 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/2123_auto_combined_QC.pdf Binary file test-data/2123_auto_combined_QC.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Heatmaps_LM8_file16.pdf Binary file test-data/Heatmaps_LM8_file16.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Heatmaps_analyze75.pdf Binary file test-data/Heatmaps_analyze75.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Heatmaps_imzml.pdf Binary file test-data/Heatmaps_imzml.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Heatmaps_processed.pdf Binary file test-data/Heatmaps_processed.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Heatmaps_rdata.pdf Binary file test-data/Heatmaps_rdata.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_analyze75.pdf Binary file test-data/Plot_analyze75.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_analyze75_allpixels.pdf Binary file test-data/Plot_analyze75_allpixels.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_imzml.pdf Binary file test-data/Plot_imzml.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_picked.pdf Binary file test-data/Plot_picked.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_processed.pdf Binary file test-data/Plot_processed.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/Plot_rdata.pdf Binary file test-data/Plot_rdata.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/QC_analyze75.pdf Binary file test-data/QC_analyze75.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/QC_empty_spectra.pdf Binary file test-data/QC_empty_spectra.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/QC_imzml.pdf Binary file test-data/QC_imzml.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/QC_rdata.pdf Binary file test-data/QC_rdata.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/analyze75_filtered2.pdf Binary file test-data/analyze75_filtered2.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/centroids_proc.pdf Binary file test-data/centroids_proc.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/centroids_rdata.pdf Binary file test-data/centroids_rdata.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/cluster_skm.RData Binary file test-data/cluster_skm.RData has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/imzml_filtered3.pdf Binary file test-data/imzml_filtered3.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/imzml_filtered4.pdf Binary file test-data/imzml_filtered4.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/imzml_filtered5.pdf Binary file test-data/imzml_filtered5.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/imzml_filtered8.pdf Binary file test-data/imzml_filtered8.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/kmeans_analyze.pdf Binary file test-data/kmeans_analyze.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out3.ibd Binary file test-data/out3.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out3.imzml --- a/test-data/out3.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out3.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out3.imzml.txt --- a/test-data/out3.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out3.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 24 --rw-r--r-- 1 meli meli 9616 Mär 24 20:25 ibd --rw-r--r-- 1 meli meli 8958 Mär 24 20:25 imzml +-rw-rw-r-- 1 meli meli 9616 Sep 27 10:51 ibd +-rw-rw-r-- 1 meli meli 8958 Sep 27 10:51 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out4.ibd Binary file test-data/out4.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out4.imzml --- a/test-data/out4.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out4.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out4.imzml.txt --- a/test-data/out4.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out4.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 44 --rw-r--r-- 1 meli meli 28792 Mär 24 19:23 ibd --rw-r--r-- 1 meli meli 12046 Mär 24 19:23 imzml +-rw-rw-r-- 1 meli meli 28792 Sep 27 10:52 ibd +-rw-rw-r-- 1 meli meli 12046 Sep 27 10:52 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out5.ibd Binary file test-data/out5.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out5.imzml --- a/test-data/out5.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out5.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out5.imzml.txt --- a/test-data/out5.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out5.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 20 --rw-r--r-- 1 meli meli 380 Mär 24 19:24 ibd --rw-r--r-- 1 meli meli 13525 Mär 24 19:24 imzml +-rw-rw-r-- 1 meli meli 380 Sep 27 10:53 ibd +-rw-rw-r-- 1 meli meli 13525 Sep 27 10:53 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out6.ibd Binary file test-data/out6.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out6.imzml --- a/test-data/out6.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out6.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out6.imzml.txt --- a/test-data/out6.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out6.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 164 --rw-r--r-- 1 meli meli 146896 Mär 24 19:25 ibd --rw-r--r-- 1 meli meli 18221 Mär 24 19:25 imzml +-rw-rw-r-- 1 meli meli 146896 Sep 27 10:53 ibd +-rw-rw-r-- 1 meli meli 18221 Sep 27 10:53 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out7.ibd Binary file test-data/out7.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out7.imzml --- a/test-data/out7.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out7.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out7.imzml.txt --- a/test-data/out7.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out7.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 116 --rw-r--r-- 1 meli meli 95976 Mär 24 19:26 ibd --rw-r--r-- 1 meli meli 18199 Mär 24 19:26 imzml +-rw-rw-r-- 1 meli meli 95976 Sep 27 10:54 ibd +-rw-rw-r-- 1 meli meli 18199 Sep 27 10:54 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out8.ibd Binary file test-data/out8.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out8.imzml --- a/test-data/out8.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out8.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,9 +9,9 @@ - - - + + + @@ -42,7 +42,7 @@ - + @@ -90,15 +90,15 @@ - - + + - - - + + + @@ -118,16 +118,16 @@ - - - + + + - - - + + + @@ -147,16 +147,16 @@ - - - + + + - - - + + + @@ -176,16 +176,16 @@ - - - + + + - - - + + + @@ -205,16 +205,16 @@ - - - + + + - - - + + + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/out8.imzml.txt --- a/test-data/out8.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/out8.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: -total 348 --rw-r--r-- 1 meli meli 335976 Mär 24 19:27 ibd --rw-r--r-- 1 meli meli 12402 Mär 24 19:27 imzml +total 260 +-rw-rw-r-- 1 meli meli 248824 Sep 27 11:44 ibd +-rw-rw-r-- 1 meli meli 12397 Sep 27 11:44 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/pca_imzml.pdf Binary file test-data/pca_imzml.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/picked.ibd Binary file test-data/picked.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/picked.imzml --- a/test-data/picked.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/picked.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -8,8 +8,8 @@ - - + + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/picked.imzml.txt --- a/test-data/picked.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/picked.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 192 --rw-r--r-- 1 meli meli 157984 Apr 21 12:42 ibd --rw-r--r-- 1 meli meli 35012 Apr 21 12:42 imzml +-rw-rw-r-- 1 meli meli 157984 Aug 30 13:47 ibd +-rw-rw-r-- 1 meli meli 35012 Aug 30 13:47 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/picked_QC.pdf Binary file test-data/picked_QC.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results1.ibd Binary file test-data/preprocessing_results1.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results1.imzml --- a/test-data/preprocessing_results1.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results1.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results1.imzml.txt --- a/test-data/preprocessing_results1.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results1.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 24 --rw-r--r-- 1 meli meli 216 Mai 10 17:37 ibd --rw-r--r-- 1 meli meli 18090 Mai 10 17:37 imzml +-rw-rw-r-- 1 meli meli 216 Oct 5 19:57 ibd +-rw-rw-r-- 1 meli meli 18090 Oct 5 19:57 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results1.pdf Binary file test-data/preprocessing_results1.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results2.ibd Binary file test-data/preprocessing_results2.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results2.imzml --- a/test-data/preprocessing_results2.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results2.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results2.imzml.txt --- a/test-data/preprocessing_results2.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results2.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 64 --rw-r--r-- 1 meli meli 37404 Mai 10 17:38 ibd --rw-r--r-- 1 meli meli 22796 Mai 10 17:38 imzml +-rw-rw-r-- 1 meli meli 37404 Oct 5 19:57 ibd +-rw-rw-r-- 1 meli meli 22796 Oct 5 19:57 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results2.pdf Binary file test-data/preprocessing_results2.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results3.ibd Binary file test-data/preprocessing_results3.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results3.imzml --- a/test-data/preprocessing_results3.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results3.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - - + + @@ -42,7 +42,7 @@ - + diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results3.imzml.txt --- a/test-data/preprocessing_results3.imzml.txt Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results3.imzml.txt Tue Nov 03 22:13:25 2020 +0000 @@ -1,4 +1,4 @@ imzML file: total 24 --rw-r--r-- 1 meli meli 960 Mai 10 17:39 ibd --rw-r--r-- 1 meli meli 18112 Mai 10 17:39 imzml +-rw-rw-r-- 1 meli meli 960 Oct 5 19:58 ibd +-rw-rw-r-- 1 meli meli 18112 Oct 5 19:58 imzml diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results3.pdf Binary file test-data/preprocessing_results3.pdf has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results4.ibd Binary file test-data/preprocessing_results4.ibd has changed diff -r 0559bc3e9d80 -r 3a385a462997 test-data/preprocessing_results4.imzml --- a/test-data/preprocessing_results4.imzml Wed May 13 17:56:49 2020 +0000 +++ b/test-data/preprocessing_results4.imzml Tue Nov 03 22:13:25 2020 +0000 @@ -9,8 +9,8 @@ - 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