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file 112_annotation_output.tabular 596 -rw-r--r--
file 112_auto_combined.ibd 537552 -rw-r--r--
file 112_auto_combined.imzml 27497 -rw-r--r--
file 112_auto_combined.imzml.txt 118 -rw-r--r--
file 112_auto_combined_QC.pdf 8009 -rw-r--r--
file 123_annotation.ibd 436764 -rw-r--r--
file 123_annotation.imzml 21166 -rw-r--r--
file 123_annotation.tabular 248 -rw-r--r--
file 123_annotation_output.tabular 332 -rw-r--r--
file 123_auto_combined.imzml.txt 118 -rw-r--r--
file 123_combine.rdata 255623 -rw-r--r--
file 123_combined.RData 255526 -rw-r--r--
file 123_combined.ibd 436764 -rw-r--r--
file 123_combined.imzml 22855 -rw-r--r--
file 123_combined.imzml.txt 118 -rw-r--r--
file 123_combined_QC.pdf 7948 -rw-r--r--
file 123_combined_auto.ibd 436764 -rw-r--r--
file 123_combined_auto.imzml 22860 -rw-r--r--
file 123_combined_auto.imzml.txt 118 -rw-r--r--
file 123_combined_auto.pdf 6077 -rw-r--r--
file 123_combined_auto.tabular 258 -rw-r--r--
file 123_combined_picked.rdata 46595 -rw-r--r--
file 123_combined_picked2.rdata 22614 -rw-r--r--
file 12_annotation_output.tabular 344 -rw-r--r--
file 12_combined.ibd 335976 -rw-r--r--
file 12_combined.imzml 18225 -rw-r--r--
file 12_combined.imzml.txt 118 -rw-r--r--
file 12_combined_QC.pdf 7920 -rw-r--r--
file 2123_annotation_output.tabular 421 -rw-r--r--
file 2123_auto_combined.ibd 638340 -rw-r--r--
file 2123_auto_combined.imzml 32132 -rw-r--r--
file 2123_auto_combined.imzml.txt 118 -rw-r--r--
file 2123_auto_combined_QC.pdf 6001 -rw-r--r--
file 3_files_combined.RData 255563 -rw-r--r--
file Analyze75.hdr 384 -rw-r--r--
file Analyze75.img 801684 -rw-r--r--
file Analyze75.t2m 178152 -rw-r--r--
file ComBat_results_Example_processed_file.html 122 -rw-r--r--
file ComBat_results_Example_processed_file.ibd 415936 -rw-r--r--
file ComBat_results_Example_processed_file.imzml 18243 -rw-r--r--
file ComBat_results_Example_processed_file.imzml.txt 129 -rw-r--r--
file ComBat_results_Example_processed_file.pdf 243210 -rw-r--r--
file Combat_40pixel.ibd 63648 -rw-r--r--
file Combat_40pixel.imzML 66386 -rw-r--r--
file DGMM_annotations.tabular 4135 -rw-r--r--
file Example_Continuous.ibd 47976 -rw-r--r--
file Example_Continuous.imzML 16845 -rw-r--r--
file Example_Processed.ibd 604744 -rw-r--r--
file Example_Processed.imzML 23929 -rw-r--r--
file Example_processed_ComBat_annotation.tabular 204 -rw-r--r--
file Heatmaps_LM8_file16.pdf 5611 -rw-r--r--
file Heatmaps_analyze75.pdf 9184 -rw-r--r--
file Heatmaps_imzml.pdf 6988 -rw-r--r--
file Heatmaps_processed.pdf 14258 -rw-r--r--
file Heatmaps_rdata.pdf 7024 -rw-r--r--
file Plot_analyze75.pdf 34630 -rw-r--r--
file Plot_analyze75_allpixels.pdf 15320 -rw-r--r--
file Plot_imzml.pdf 34904 -rw-r--r--
file Plot_picked.pdf 7970 -rw-r--r--
file Plot_processed.pdf 10778 -rw-r--r--
file Plot_rdata.pdf 36754 -rw-r--r--
file QC_analyze75.pdf 449956 -rw-r--r--
file QC_empty_spectra.pdf 5790 -rw-r--r--
file QC_imzml.pdf 619530 -rw-r--r--
file QC_imzml_shortreport.pdf 34760 -rw-r--r--
file analyze75.svg 1601 -rw-r--r--
file analyze75_filtered2.pdf 7151 -rw-r--r--
file annotation_40pixel.tabular 1930 -rw-r--r--
file annotations.tabular 188 -rw-r--r--
file annotations_file1.tabular 188 -rw-r--r--
file annotations_file2.tabular 188 -rw-r--r--
file annotations_file3.tabular 206 -rw-r--r--
file annotations_rdata.tabular 160 -rw-r--r--
file best_r_test5.txt 2 -rw-r--r--
file best_s_test5.txt 2 -rw-r--r--
file centroids_rdata.pdf 184248 -rw-r--r--
file classes_proc.tabular 243 -rw-r--r--
file classes_ssc.tabular 179 -rw-r--r--
file cluster_skm.RData 206894 -rw-r--r--
file cluster_skm.rdata 206894 -rw-r--r--
file cluster_skm.tabular 277 -rw-r--r--
file coefficients_test2.tabular 215836 -rw-r--r--
file coefficients_test4.tabular 220546 -rw-r--r--
file coefficients_test7.tabular 215836 -rw-r--r--
file coloc1.pdf 49133 -rw-r--r--
file coloc2.pdf 27027 -rw-r--r--
file coloc3.pdf 25332 -rw-r--r--
file coloc_table1.tabular 454 -rw-r--r--
file coloc_table2.tabular 277 -rw-r--r--
file coloc_table3.tabular 1298 -rw-r--r--
file dgmm_summary1.tabular 277 -rw-r--r--
file dgmm_summary2.tabular 302 -rw-r--r--
file dgmm_test1.pdf 27488 -rw-r--r--
file dgmm_test2.RData 108159 -rw-r--r--
file dgmm_test2.pdf 27492 -rw-r--r--
file empty_spectra.rdata 156496 -rw-r--r--
file estimates_r1_k6_mz1135.93347167969.tabular 152 -rw-r--r--
file estimates_r2_k10_mz1200.46533203125.tabular 230 -rw-r--r--
file features_out1.tabular 123166 -rw-r--r--
file features_out3.tabular 123166 -rw-r--r--
file features_test6.tabular 891 -rw-r--r--
file featuresofinterest5.tabular 399 -rw-r--r--
file imzml_filtered3.pdf 7439 -rw-r--r--
file imzml_filtered4.pdf 7212 -rw-r--r--
file imzml_filtered5.pdf 7453 -rw-r--r--
file imzml_filtered8.pdf 7530 -rw-r--r--
file inputcalibrantfile1.tabular 18 -rw-r--r--
file inputcalibrantfile2.txt 39 -rw-r--r--
file inputpeptides.tabular 34 -rw-r--r--
file inputpeptides2.tabular 27 -rw-r--r--
file inputpixels_2column.tabular 37 -rw-r--r--
file int_matrix1.tabular 92687 -rw-r--r--
file int_matrix3.tabular 92687 -rw-r--r--
file kmeans_analyze.pdf 119957 -rw-r--r--
file loadings_and_weights_test2.tabular 261679 -rw-r--r--
file loadings_and_weights_test4.tabular 380934 -rw-r--r--
file loadings_and_weights_test7.tabular 261679 -rw-r--r--
file mean_out2.tabular 207033 -rw-r--r--
file msidata_1.RData 115643 -rw-r--r--
file msidata_2.RData 169058 -rw-r--r--
file msidata_3.RData 122067 -rw-r--r--
file out3.ibd 9616 -rw-r--r--
file out3.imzml 8958 -rw-r--r--
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file out8.html 122 -rw-r--r--
file out8.ibd 248824 -rw-r--r--
file out8.imzml 12071 -rw-r--r--
file out8.imzml.txt 118 -rw-r--r--
file pca_imzml.pdf 45068 -rw-r--r--
file picked.ibd 157984 -rw-r--r--
file picked.imzml 35012 -rw-r--r--
file picked.imzml.txt 118 -rw-r--r--
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file picked_QC.pdf 5998 -rw-r--r--
file pixel_annotation_file1.tabular 300 -rw-r--r--
file pixel_out2.tabular 596 -rw-r--r--
file pixel_out3.tabular 552 -rw-r--r--
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file pixels_test2.tabular 564 -rw-r--r--
file pixels_test4.tabular 568 -rw-r--r--
file pixels_test6.tabular 1867 -rw-r--r--
file pixels_test7.tabular 373 -rw-r--r--
file preprocessed.RData 81451 -rw-r--r--
file preprocessing_results1.html 119 -rw-r--r--
file preprocessing_results1.ibd 376 -rw-r--r--
file preprocessing_results1.imzml 18092 -rw-r--r--
file preprocessing_results1.imzml.txt 115 -rw-r--r--
file preprocessing_results1.pdf 81413 -rw-r--r--
file preprocessing_results2.html 119 -rw-r--r--
file preprocessing_results2.ibd 37404 -rw-r--r--
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file preprocessing_results5.imzml.txt 118 -rw-r--r--
file preprocessing_results5.pdf 442469 -rw-r--r--
file preprocessing_results_combat_40pixel.html 120 -rw-r--r--
file preprocessing_results_combat_40pixel.ibd 63648 -rw-r--r--
file preprocessing_results_combat_40pixel.imzml 65947 -rw-r--r--
file preprocessing_results_combat_40pixel.imzml.txt 124 -rw-r--r--
file preprocessing_results_combat_40pixel.pdf 35730 -rw-r--r--
file probability_r1_k6_mz1023.70806884766.tabular 28047 -rw-r--r--
file probability_r2_k10_mz1135.93347167969.tabular 20164 -rw-r--r--
file random_factors.tabular 228 -rw-r--r--
file rdata_notfiltered.pdf 7203 -rw-r--r--
file scores_pca.tabular 291 -rw-r--r--
file sd_out2.tabular 225218 -rw-r--r--
file spatial_DGMM_input.ibd 16056 -rw-r--r--
file spatial_DGMM_input.imzML 618355 -rw-r--r--
file spectra_1_pixel.tabular 12 -rw-r--r--
file spectra_info_123_combi.txt 659 -rw-r--r--
file spectra_info_imzml.txt 479 -rw-r--r--
file tabular_LM8file16.tabular 45 -rw-r--r--
file tabular_analyze75.tabular 60 -rw-r--r--
file tabular_imzml.tabular 69 -rw-r--r--
file tabular_rdata.tabular 46 -rw-r--r--
file test1.pdf 11578 -rw-r--r--
file test2.pdf 77877 -rw-r--r--
file test2.rdata 291697 -rw-r--r--
file test3.pdf 11101 -rw-r--r--
file test4.pdf 69628 -rw-r--r--
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file test7.pdf 8897 -rw-r--r--
file test7.rdata 291697 -rw-r--r--
file testfile_squares.rdata 70844 -rw-r--r--
file toplabels_skm.tabular 1111 -rw-r--r--
file toplabels_ssc.tabular 2810 -rw-r--r--
file xy_coordinates.tabular 30 -rw-r--r--
file xy_coordinates2.tabular 20 -rw-r--r--