Mercurial > repos > galaxyp > cardinal_combine

diff combine.xml @ 10:d64858cd48c6 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 888b3e991d0752b694bf480531ce0e5318c2f337-dirty"
author galaxyp
date Fri, 07 May 2021 09:50:35 +0000
parents 11d9b3ebbabd
children 268f8b213cee
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line diff
--- a/combine.xml	Tue Nov 03 22:22:18 2020 +0000
+++ b/combine.xml	Fri May 07 09:50:35 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.0">
+<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.1">
     <description>
         combine several mass spectrometry imaging datasets into one
     </description>
@@ -120,6 +120,11 @@
     ## same name for MSI data files necessary to combine data into one single coordinate system
     run(msidata_$i) = "msidata"
 
+    ## remove z dimension and 3D information in pixelData to allow combining datasets with and without z dimension
+    coord(msidata_${i})\$z <- NULL
+    pData(msidata_${i})\$'3DPositionX' <- NULL
+    pData(msidata_${i})\$'3DPositionY' <- NULL
+
 ############ 3) Read and process annotation tabular files ######################
 
     #if str($annotation_cond.annotation_tabular) == 'annotation'