comparison test-data/preprocessing_results1.imzml @ 15:f7a924565c39 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 91e77c139cb3b7c6d67727dc39140dd79355fa0c
author galaxyp
date Thu, 04 Jul 2024 13:30:08 +0000
parents 4672252da0a0
children
comparison
equal deleted inserted replaced
14:4da98a3a0b25 15:f7a924565c39
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" /> 11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="22bd3147-231d-4076-b6bd-67c1fa7c6ef3" /> 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="5780eca2-b73c-4fbe-a516-c23a5b0273d5" />
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="831eba0fc850529d1351bcbb1baf779fe0773e1b" /> 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="0a57a2ec02cd6ac56ba0d77367107b3b42360d76" />
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
15 </fileContent> 15 </fileContent>
16 </fileDescription> 16 </fileDescription>
17 <referenceableParamGroupList count="4"> 17 <referenceableParamGroupList count="4">
18 <referenceableParamGroup id="spectrum1"> 18 <referenceableParamGroup id="spectrum1">
40 <sample id="sample1" name="Sample1"> 40 <sample id="sample1" name="Sample1">
41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
42 </sample> 42 </sample>
43 </sampleList> 43 </sampleList>
44 <softwareList count="1"> 44 <softwareList count="1">
45 <software id="Cardinal" version="2.6.0"> 45 <software id="Cardinal" version="3.4.3">
46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
47 </software> 47 </software>
48 </softwareList> 48 </softwareList>
49 <scanSettingsList count="1"> 49 <scanSettingsList count="1">
50 <scanSettings id="scansettings1"> 50 <scanSettings id="scansettings1">
84 </scanList> 84 </scanList>
85 <binaryDataArrayList count="2"> 85 <binaryDataArrayList count="2">
86 <binaryDataArray encodedLength="0"> 86 <binaryDataArray encodedLength="0">
87 <referenceableParamGroupRef ref="mzArray" /> 87 <referenceableParamGroupRef ref="mzArray" />
88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
91 <binary /> 91 <binary />
92 </binaryDataArray> 92 </binaryDataArray>
93 <binaryDataArray encodedLength="0"> 93 <binaryDataArray encodedLength="0">
94 <referenceableParamGroupRef ref="intensityArray" /> 94 <referenceableParamGroupRef ref="intensityArray" />
95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="48" /> 95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="52" />
96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
98 <binary /> 98 <binary />
99 </binaryDataArray> 99 </binaryDataArray>
100 </binaryDataArrayList> 100 </binaryDataArrayList>
101 </spectrum> 101 </spectrum>
102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> 102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2">
113 </scanList> 113 </scanList>
114 <binaryDataArrayList count="2"> 114 <binaryDataArrayList count="2">
115 <binaryDataArray encodedLength="0"> 115 <binaryDataArray encodedLength="0">
116 <referenceableParamGroupRef ref="mzArray" /> 116 <referenceableParamGroupRef ref="mzArray" />
117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
120 <binary /> 120 <binary />
121 </binaryDataArray> 121 </binaryDataArray>
122 <binaryDataArray encodedLength="0"> 122 <binaryDataArray encodedLength="0">
123 <referenceableParamGroupRef ref="intensityArray" /> 123 <referenceableParamGroupRef ref="intensityArray" />
124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="80" /> 124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="88" />
125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
127 <binary /> 127 <binary />
128 </binaryDataArray> 128 </binaryDataArray>
129 </binaryDataArrayList> 129 </binaryDataArrayList>
130 </spectrum> 130 </spectrum>
131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> 131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3">
142 </scanList> 142 </scanList>
143 <binaryDataArrayList count="2"> 143 <binaryDataArrayList count="2">
144 <binaryDataArray encodedLength="0"> 144 <binaryDataArray encodedLength="0">
145 <referenceableParamGroupRef ref="mzArray" /> 145 <referenceableParamGroupRef ref="mzArray" />
146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
149 <binary /> 149 <binary />
150 </binaryDataArray> 150 </binaryDataArray>
151 <binaryDataArray encodedLength="0"> 151 <binaryDataArray encodedLength="0">
152 <referenceableParamGroupRef ref="intensityArray" /> 152 <referenceableParamGroupRef ref="intensityArray" />
153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="112" /> 153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="124" />
154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
156 <binary /> 156 <binary />
157 </binaryDataArray> 157 </binaryDataArray>
158 </binaryDataArrayList> 158 </binaryDataArrayList>
159 </spectrum> 159 </spectrum>
160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> 160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4">
171 </scanList> 171 </scanList>
172 <binaryDataArrayList count="2"> 172 <binaryDataArrayList count="2">
173 <binaryDataArray encodedLength="0"> 173 <binaryDataArray encodedLength="0">
174 <referenceableParamGroupRef ref="mzArray" /> 174 <referenceableParamGroupRef ref="mzArray" />
175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
178 <binary /> 178 <binary />
179 </binaryDataArray> 179 </binaryDataArray>
180 <binaryDataArray encodedLength="0"> 180 <binaryDataArray encodedLength="0">
181 <referenceableParamGroupRef ref="intensityArray" /> 181 <referenceableParamGroupRef ref="intensityArray" />
182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="144" /> 182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="160" />
183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
185 <binary /> 185 <binary />
186 </binaryDataArray> 186 </binaryDataArray>
187 </binaryDataArrayList> 187 </binaryDataArrayList>
188 </spectrum> 188 </spectrum>
189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> 189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5">
200 </scanList> 200 </scanList>
201 <binaryDataArrayList count="2"> 201 <binaryDataArrayList count="2">
202 <binaryDataArray encodedLength="0"> 202 <binaryDataArray encodedLength="0">
203 <referenceableParamGroupRef ref="mzArray" /> 203 <referenceableParamGroupRef ref="mzArray" />
204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
207 <binary /> 207 <binary />
208 </binaryDataArray> 208 </binaryDataArray>
209 <binaryDataArray encodedLength="0"> 209 <binaryDataArray encodedLength="0">
210 <referenceableParamGroupRef ref="intensityArray" /> 210 <referenceableParamGroupRef ref="intensityArray" />
211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="176" /> 211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="196" />
212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
214 <binary /> 214 <binary />
215 </binaryDataArray> 215 </binaryDataArray>
216 </binaryDataArrayList> 216 </binaryDataArrayList>
217 </spectrum> 217 </spectrum>
218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> 218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6">
229 </scanList> 229 </scanList>
230 <binaryDataArrayList count="2"> 230 <binaryDataArrayList count="2">
231 <binaryDataArray encodedLength="0"> 231 <binaryDataArray encodedLength="0">
232 <referenceableParamGroupRef ref="mzArray" /> 232 <referenceableParamGroupRef ref="mzArray" />
233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
236 <binary /> 236 <binary />
237 </binaryDataArray> 237 </binaryDataArray>
238 <binaryDataArray encodedLength="0"> 238 <binaryDataArray encodedLength="0">
239 <referenceableParamGroupRef ref="intensityArray" /> 239 <referenceableParamGroupRef ref="intensityArray" />
240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="208" /> 240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="232" />
241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
243 <binary /> 243 <binary />
244 </binaryDataArray> 244 </binaryDataArray>
245 </binaryDataArrayList> 245 </binaryDataArrayList>
246 </spectrum> 246 </spectrum>
247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> 247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7">
258 </scanList> 258 </scanList>
259 <binaryDataArrayList count="2"> 259 <binaryDataArrayList count="2">
260 <binaryDataArray encodedLength="0"> 260 <binaryDataArray encodedLength="0">
261 <referenceableParamGroupRef ref="mzArray" /> 261 <referenceableParamGroupRef ref="mzArray" />
262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
265 <binary /> 265 <binary />
266 </binaryDataArray> 266 </binaryDataArray>
267 <binaryDataArray encodedLength="0"> 267 <binaryDataArray encodedLength="0">
268 <referenceableParamGroupRef ref="intensityArray" /> 268 <referenceableParamGroupRef ref="intensityArray" />
269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="240" /> 269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="268" />
270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
272 <binary /> 272 <binary />
273 </binaryDataArray> 273 </binaryDataArray>
274 </binaryDataArrayList> 274 </binaryDataArrayList>
275 </spectrum> 275 </spectrum>
276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> 276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8">
287 </scanList> 287 </scanList>
288 <binaryDataArrayList count="2"> 288 <binaryDataArrayList count="2">
289 <binaryDataArray encodedLength="0"> 289 <binaryDataArray encodedLength="0">
290 <referenceableParamGroupRef ref="mzArray" /> 290 <referenceableParamGroupRef ref="mzArray" />
291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
294 <binary /> 294 <binary />
295 </binaryDataArray> 295 </binaryDataArray>
296 <binaryDataArray encodedLength="0"> 296 <binaryDataArray encodedLength="0">
297 <referenceableParamGroupRef ref="intensityArray" /> 297 <referenceableParamGroupRef ref="intensityArray" />
298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="272" /> 298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="304" />
299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
301 <binary /> 301 <binary />
302 </binaryDataArray> 302 </binaryDataArray>
303 </binaryDataArrayList> 303 </binaryDataArrayList>
304 </spectrum> 304 </spectrum>
305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> 305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9">
316 </scanList> 316 </scanList>
317 <binaryDataArrayList count="2"> 317 <binaryDataArrayList count="2">
318 <binaryDataArray encodedLength="0"> 318 <binaryDataArray encodedLength="0">
319 <referenceableParamGroupRef ref="mzArray" /> 319 <referenceableParamGroupRef ref="mzArray" />
320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
323 <binary /> 323 <binary />
324 </binaryDataArray> 324 </binaryDataArray>
325 <binaryDataArray encodedLength="0"> 325 <binaryDataArray encodedLength="0">
326 <referenceableParamGroupRef ref="intensityArray" /> 326 <referenceableParamGroupRef ref="intensityArray" />
327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="304" /> 327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="340" />
328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> 328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" />
329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> 329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" />
330 <binary /> 330 <binary />
331 </binaryDataArray> 331 </binaryDataArray>
332 </binaryDataArrayList> 332 </binaryDataArrayList>
333 </spectrum> 333 </spectrum>
334 </spectrumList> 334 </spectrumList>