Mercurial > repos > galaxy-australia > cactus_export
changeset 2:8d047c940e71 draft default tip
"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c70e1155d0ba84ad9aadec84633e9024e78d3765-dirty"
| author | galaxy-australia |
|---|---|
| date | Mon, 04 Apr 2022 06:17:12 +0000 |
| parents | 5c48d182d4fd |
| children | |
| files | README.md README.rst |
| diffstat | 2 files changed, 18 insertions(+), 12 deletions(-) [+] |
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--- a/README.md Mon Apr 04 06:09:17 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,12 +0,0 @@ -# Cactus - -This suite contains a wrapper for the [Cactus](github.com/comparativeGenomicsToolkit/cactus) whole-genome aligner and another wrapper for exporting the data it generates. - -## Requirements - -The developers provide an official Docker container. -However, the Docker container won't run unless `/etc/passwd` is mounted ([see this issue](https://github.com/ComparativeGenomicsToolkit/cactus/issues/677)). -Because of this, it is recommended to run Cactus using Singularity. - -Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM for a -progressive alignment of three chromosome-level, 150 megabase genomes. \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Apr 04 06:17:12 2022 +0000 @@ -0,0 +1,18 @@ +Cactus +====== + +This suite contains a wrapper for the +`Cactus <github.com/comparativeGenomicsToolkit/cactus>`__ whole-genome +aligner and another wrapper for exporting the data it generates. + +Requirements +------------ + +The developers provide an official Docker container. However, the Docker +container won’t run unless ``/etc/passwd`` is mounted (`see this +issue <https://github.com/ComparativeGenomicsToolkit/cactus/issues/677>`__). +Because of this, it is recommended to run Cactus using Singularity. + +Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM +for a progressive alignment of three chromosome-level, 150 megabase +genomes.