# HG changeset patch
# User fubar
# Date 1384759285 18000
# Node ID 21bcfe99f623394630080d93fe49ab416bd83965
# Parent  01ec43556e16e3666f3fea7eacf5dcef5fdbfa7b
Deleted selected files

diff -r 01ec43556e16 -r 21bcfe99f623 rgweblogo/tool_dependencies.xml
--- a/rgweblogo/tool_dependencies.xml	Mon Nov 18 02:19:03 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="numpy" version="1.7.1">
-        <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="ghostscript" version="9.07">
-        <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="package_weblogo" version="3.3">
-        <install version="1.0">
-            <actions>
-                <!-- populate the environment variables from the dependend repos -->
-                <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action>
-                <action type="shell_command">echo `ls -lt` &amp;&amp; echo `pwd`</action>
-                
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="c842299349c0" name="package_ghostscript_9_07" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="ghostscript" version="9.07" />
-                    </repository>
-                    <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="numpy" version="1.7.1" />
-                    </repository>
-                </action>
-                <!-- install weblogo -->
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
-                    python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable action="set_to" name="WEBLOGO_PATH">$INSTALL_DIR/bin/weblogo</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            weblogo3 is a python version of the old weblogo2.8 or so. Requires numpy and ghostscript so these are installed if not already on your system - if that happens, please be patient
-            while numpy compiles - especially if the ATLAS libraries are being installed - which is not at present.
-        </readme>
-     </package>
-</tool_dependency>